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View Structure Prediction Details

Protein: gi|125559024
Organism: Oryza sativa Indica Group
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125559024.

Description E-value Query
Range
Subject
Range
gi|70727425, gi|... - gi|70727425|ref|YP_254341.1| hypothetical protein SH2426 [Staphylococcus haemolyticus JCSC1435], gi|...
176.0 [0..4] [168..84]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDAPSAAA AEGSQHASAA EGGSAAAAAS AAPAAKAAEA LLPSLSIWPP SQRTRDAVVR  60
   61 RLVQTLVAPS ILSQRYGAVP EAEAGRAAAA VEAEAYAAVT ESSSAAAAPA SVEDGIEVLQ 120
  121 AYSKEVSRRL LELAKSRAAP SPAAAAPAEG AASESEAAAA PAPAEDCYVV LNGIPVISAM 180
  181 FFHKCELMIK QDNCIFAL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [199-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIPLTAVVTS VTVTARVEVE LSGGWDEIGL GLSGFGVLFS FLGIIMLFDK GFLAIGNILF  60
   61 VSGVSLTIGP KSTVQFFTKP KNHKGSIAFG IGFFLVLIGW PFFGMLAEAY GFVKLFRGFW 120
  121 PTAAVYLQKS PTFGWIFHHP LVTSVQGKTS PGVIVALLLE LDHSKGCRVT SKET

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 49.522879
Match: PF04178.3
Description: No description for PF04178.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle