YRC Public Data Repository - Protein Structure Prediction

Protein:	PDRP1_ORYSI
Organism:	Oryza sativa Indica Group
Length:	471 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDRP1_ORYSI.

Description	E-value	Query Range	Subject Range
gi\|27261033, gi\|... - gi\|50937987\|ref\|XP_478521.1\| putative ATP/GTP-binding protein [Oryza sativa (japonica cultivar-group...	404.0	[0..35]	[443..35]
PDRP1_ARATH - Pyruvate, phosphate dikinase regulatory protein 1, chloroplastic OS=Arabidopsis thaliana GN=RP1 PE=1...	377.0	[0..44]	[442..13]
PDRP1_MAIZE - Pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Zea mays GN=PDRP1 PE=1 SV=1	369.0	[0..20]	[443..9]
PDRP_GEOSL - Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter sulfurreducens (strain ATCC 51... Y450_GEOSL - Putative phosphotransferase GSU0450 OS=Geobacter sulfurreducens GN=GSU0450 PE=3 SV=1	349.0	[0..151]	[428..1]
PDRP_ALKOO - Putative pyruvate, phosphate dikinase regulatory protein OS=Alkaliphilus oremlandii (strain OhILAs) ...	347.0	[0..151]	[434..1]
PDRP_GEOMG - Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter metallireducens (strain GS-15 ...	346.0	[0..151]	[428..1]
gi\|110600815, gi... - gi\|110600815\|ref\|ZP_01389026.1\| Protein of unknown function DUF299 [Geobacter sp. FRC-32], gi\|110548...	345.0	[0..141]	[429..5]
PDRP_RHOP2 - Putative pyruvate, phosphate dikinase regulatory protein OS=Rhodopseudomonas palustris (strain HaA2)...	345.0	[0..155]	[435..7]
gi\|90573775, gi\|... - gi\|90573775\|ref\|ZP_01230283.1\| hypothetical protein CdifQ_02002636 [Clostridium difficile QCD-32g58]... PDRP_PEPD6 - Putative pyruvate, phosphate dikinase regulatory protein OS=Peptoclostridium difficile (strain 630) ...	343.0	[0..157]	[431..7]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSTSPR FGSMISAKLA SPPPSLLLPP SPRLQGRRLT PPSCTPGTPA ALPSPGPDKE  60
   61 PEREAAGSGS GSATTPRSPA QLGSSQLHRW SRARAHRSGR RLEWPTIRDR GSGGASSPPT 120
  121 PTRPHPSSDE AASAAAKVAV EEEDGYGVVG RDEAAKSIYM VS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGTGWTAEHS VNAALGQFEH CLVDRGCAVN THLFNGIDDM DRLIEIVKQA AKEGALVLYT  60
   61 LADPSMAEAT KKACELWGVP SNDILRPTIE AIASHIGVAP SGIPRSSPSR KGQLTEDYFR 120
  121 RIEAIDFTIK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [293-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDDGAQPQNL NRAHIVLVGV SRTGKTPLSI YLAQKGYKVA NVPIVMGVNL PKSLFEIDQD  60
   61 KIFGLTINPV VLQAIRKARA KTLGFHGQKS NYAEMEHVRG ELDHANQIFA QHPIWPVIEV 120
  121 TGKAIEETAA VVVRIFHDRK QKCAMPRISK RVAPIRIYDY LSEMVNTHVE YQKIFARDF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits