YRC Public Data Repository - Protein Structure Prediction

Protein:	VA0E2_RAT
Organism:	Rattus norvegicus
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VA0E2_RAT.

Description	E-value	Query Range	Subject Range
gi\|109068818 - gi\|109068818\|ref\|XP_001096894.1\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit isoform 1...	130.0	[0..1]	[74..31]
gi\|114616687 - gi\|114616687\|ref\|XP_519473.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	129.0	[0..1]	[74..31]
gi\|119600427, gi... - gi\|21758361\|dbj\|BAC05292.1\| unnamed protein product [Homo sapiens], gi\|119600427\|gb\|EAW80021.1\| ATPa...	129.0	[0..1]	[74..31]
gi\|73978959 - gi\|73978959\|ref\|XP_539905.2\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit [Canis famili...	124.0	[0..1]	[81..31]
gi\|58384490, gi\|... - gi\|58384490\|ref\|XP_313344.2\| ENSANGP00000011861 [Anopheles gambiae str. PEST], gi\|55241061\|gb\|EAA088...	123.0	[0..7]	[80..46]
VA0E2_BOVIN - V-type proton ATPase subunit e 2 OS=Bos taurus GN=ATP6V0E2 PE=3 SV=1	117.0	[0..1]	[81..1]
gi\|94468560 - gi\|94468560\|gb\|ABF18129.1\| vacuolar ATPase M9 [Aedes aegypti]	116.0	[0..7]	[80..5]

Back

Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAHSFALPV IIFTTFWGLI GIAGPWFVPK GPNRGVIITM LVATAVCCYL FWLIAILAQL  60
   61 NPLFGPQLKN ETIWYVRFLW E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.05061
Match:	PF05493.4
Description:	No description for PF05493.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits