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View Structure Prediction Details

Protein: gi|125542540
Organism: Oryza sativa Indica Group
Length: 223 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125542540.

Description E-value Query
Range
Subject
Range
VA726_ARATH - Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2
225.0 [0..4] [222..1]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPQKRTTLV YSFVARGAVV LADHAEVSGN FASVAAQCLQ KLPSTNNRHS YNCDGHTFNY  60
   61 HVHDGFTYCV VATESAGRQL PVGFIERVKE DFSKKYSGGK AKNATANSLK REYGPKLKEH 120
  121 MKYCDAHPEE IDKLAKVKAQ VTEVKGVMMQ NIEKVLDRGE KIELLVDKTE DLRSQAQDFR 180
  181 KAGTKIRRKM WWENMKMKLI VFGIVVALIL VIILTVCRDL NCW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.221849
Match: 2nupC
Description: No description for 2nupC was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle