YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|125542931
Organism: Oryza sativa Indica Group
Length: 494 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125542931.

Description E-value Query
Range
Subject
Range
gi|32172502 - gi|32172502|gb|AAP74371.1| FAE1 [Marchantia polymorpha]
473.0 [0..1] [494..36]

Back

Predicted Domain #1
Region A:
Residues: [1-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGAAGYSGS VKLKYVKLGY QYLVNHFLTL LLVPVMAATA LELARMGPGE LLSLWRSLQL  60
   61 DLVHILCSVF LVVFVGTVYF MSRPRPVYLV DYSCYKPPPS CRVPFATFME HTRLITDDEK 120
  121 SVRFQTRILE RSGLGEETCL PPANHYIPPN PSMEASRAEA QLVIFSAIDD LVRRTGLKPK 180
  181 DIDILVVNCS LFSPTPSLSA MIINKYKLRS NIRSFNLSGM GCSAGLISLD LARDMLQVHP 240
  241 NSNALVVSTE IITPNFYWGT RRDMMLPNCL FRMGAAAILL SNRRREARRA KYRLMHVVRT 300
  301 HKGADDRAYR CVYEEEDEQG HSGISLSKEL MAIAGDALKS NITTIGPLVL PMSEQLLFFF 360
  361 RLVGRKLINK KWKPYIPDFK LAFEHFCIHA GGRAVIDELQ KNLDLSAQHV EASRMTLHRF 420
  421 GNTSSSSLWY ELAYIEAKGR MRRGDRVWQI GFGSGFKCNS AVWKCLRTVK TPADGPWDDC 480
  481 IHRYPVDIPE VVKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.0
Match: 1bi5A
Description: Chalcone synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.61499311836466 bayes_pls_golite062009
transferase activity 1.02674433736465 bayes_pls_golite062009
transferase activity, transferring acyl groups 0.95018443969363 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 0.71137845857094 bayes_pls_golite062009
acyltransferase activity 0.57223728364314 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle