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View Structure Prediction Details

Protein: GLHA_RAT
Organism: Rattus norvegicus
Length: 120 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLHA_RAT.

Description E-value Query
Range		 Subject
Range
GLHA_PANTA - Glycoprotein hormones alpha chain OS=Panthera tigris altaica GN=CGA PE=2 SV=1
 225.0 [0..1] [120..1]
GLHA_PIG - Glycoprotein hormones alpha chain OS=Sus scrofa GN=CGA PE=1 SV=2
gi|226399, gi|10... - gi|226399|prf||1510300A glycoprotein hormone alpha, pir||UTPGA glycoprotein hormones alpha chain pre...
 225.0 [0..1] [120..1]
GLHA_AILFU - Glycoprotein hormones alpha chain OS=Ailurus fulgens GN=CGA PE=2 SV=1
 225.0 [0..1] [120..1]
gi|88595363 - gi|88595363|dbj|BAE79777.1| glycoprotein hormones, alpha subunit precursor protein [Phodopus sungoru...
 225.0 [0..1] [120..2]
GLHA_TRIVU - Glycoprotein hormones alpha chain OS=Trichosurus vulpecula GN=CGA PE=2 SV=1
GLHA_MONDO - Glycoprotein hormones alpha chain OS=Monodelphis domestica GN=CGA PE=2 SV=1
GLHA_MACRU - Glycoprotein hormones alpha chain OS=Macropus rufus GN=CGA PE=2 SV=1
 225.0 [0..1] [120..1]
GLHA_BOSMU - Glycoprotein hormones alpha chain OS=Bos mutus grunniens GN=CGA PE=3 SV=1
GLHA_BOVIN - Glycoprotein hormones alpha chain OS=Bos taurus GN=CGA PE=1 SV=1
 225.0 [0..1] [120..1]
gi|11096285 - gi|11096285|gb|AAG30279.1|AF307151_1 glycoprotein hormone alpha-subunit [Mus musculus molossinus]
GLHA_MOUSE - Glycoprotein hormones alpha chain OS=Mus musculus GN=Cga PE=2 SV=1
 224.0 [0..1] [120..1]
GLHA_FELCA - Glycoprotein hormones alpha chain OS=Felis catus GN=CGA PE=2 SV=1
 224.0 [0..1] [119..1]
GLHA_SHEEP - Glycoprotein hormones alpha chain OS=Ovis aries GN=CGA PE=1 SV=2
 224.0 [0..1] [120..1]
GLHA_CERNI - Glycoprotein hormones alpha chain OS=Cervus nippon GN=CGA PE=2 SV=1
 224.0 [0..1] [120..1]

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Predicted Domain #1
Region A:
Residues: [1-120] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDCYRRYAAV ILVMLSMVLH ILHSLPDGDL IIQGCPECKL KENKYFSKLG APIYQCMGCC  60
   61 FSRAYPTPAR SKKTMLVPKN ITSEATCCVA KSFTKATVMG NARVENHTDC HCSTCYYHKS 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.69897
Match: 1dz7A
Description: Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha)
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle