YRC Public Data Repository - Protein Structure Prediction

Protein:	FXYD6_RAT
Organism:	Rattus norvegicus
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FXYD6_RAT.

Description	E-value	Query Range	Subject Range
FXYD6_MOUSE - FXYD domain-containing ion transport regulator 6 OS=Mus musculus GN=Fxyd6 PE=1 SV=2	166.0	[0..1]	[94..1]
gi\|109108822 - gi\|109108822\|ref\|XP_001095861.1\| PREDICTED: similar to FXYD domain-containing ion transport regulato... FXYD6 - FXYD domain containing ion transport regulator 6 gi\|117644597, gi... - gi\|61361830\|gb\|AAX42110.1\| FXYD domain containing ion transport regulator 6 [synthetic construct], g... CCDS8387.1_1 - null	161.0	[0..1]	[94..1]
gi\|60653753, gi\|... - gi\|60653755\|gb\|AAX29571.1\| FXYD domain containing ion transport regulator 6 [synthetic construct], g...	161.0	[0..1]	[94..1]
gi\|55637033 - gi\|55637033\|ref\|XP_508784.1\| PREDICTED: similar to FXYD domain-containing ion transport regulator 6 ... FXYD6_PONAB - FXYD domain-containing ion transport regulator 6 OS=Pongo abelii GN=FXYD6 PE=3 SV=1 FXYD6_PONPY - FXYD domain-containing ion transport regulator 6 precursor - Pongo pygmaeus (Orangutan)	160.0	[0..1]	[94..1]
FXYD6_MACFA - FXYD domain-containing ion transport regulator 6 OS=Macaca fascicularis GN=FXYD6 PE=3 SV=1	159.0	[0..1]	[94..1]
gi\|7672728 - gi\|7672728\|gb\|AAF66613.1\|AF142439_1 phosphohippolin [Rattus norvegicus]	159.0	[0..1]	[94..1]
gi\|114640716 - gi\|114640716\|ref\|XP_508784.2\| PREDICTED: hypothetical protein [Pan troglodytes]	159.0	[0..1]	[94..13]
FXYD6_BOVIN - FXYD domain-containing ion transport regulator 6 OS=Bos taurus GN=FXYD6 PE=3 SV=1	157.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METVLILCSL LAPVVLASAA EKEKEKDPFY YDYQTLRIGG LVFAVVLFSV GILLILSRRC  60
   61 KCSFNQKPRA PGDEEAQVEN LITTNAAEPQ KAEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	2jo1A
Description:	No description for 2jo1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits