YRC Public Data Repository - Protein Structure Prediction

Protein:	AP2S1_RAT
Organism:	Rattus norvegicus
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP2S1_RAT.

Description	E-value	Query Range	Subject Range
gi\|74007149 - gi\|74007149\|ref\|XP_854230.1\| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B subuni...	166.0	[0..2]	[142..190]
gi\|89042891 - gi\|89042891\|ref\|XP_944818.1\| PREDICTED: similar to adaptor-related protein complex 1 sigma 2 subunit...	154.0	[0..2]	[142..48]
gi\|114601211 - gi\|114601211\|ref\|XP_001148407.1\| PREDICTED: similar to clathrin coat assembly protein-like isoform 2...	154.0	[0..1]	[142..101]
gi\|38109895, gi\|... - gi\|39951407\|ref\|XP_363420.1\| hypothetical protein MG01346.4 [Magnaporthe grisea 70-15], gb\|EAA55695....	153.0	[0..2]	[142..3]
gi\|76610718 - gi\|76610718\|ref\|XP_612669.2\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 iso...	149.0	[0..1]	[142..37]
gi\|109101341 - gi\|109101341\|ref\|XP_001098858.1\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3...	149.0	[0..1]	[142..75]
gi\|108883712, gi... - gi\|157113049\|ref\|XP_001657742.1\| clathrin coat assembly protein ap19 [Aedes aegypti], gi\|108883712\|g...	146.0	[0..1]	[142..1]
gi\|11999126 - gi\|11999126\|gb\|AAG43051.1\|AF228054_1 clathrin-associated adaptor complex AP-1 small chain sigma1 [Dr...	145.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRFILIQNR AGKTRLAKWY MQFDDDEKQK LIEEVHAVVT VRDAKHTNFV EFRNFKIIYR  60
   61 RYAGLYFCIC VDVNDNNLAY LEAIHNFVEV LNEYFHNVCE LDLVFNFYKV YTVVDEMFLA 120
  121 GEIRETSQTK VLKQLLMLQS LE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1gw5S
Description:	Sigma2 adaptin (clathrin coat assembly protein AP17)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits