YRC Public Data Repository - Protein Structure Prediction

Protein:	VATF_RAT
Organism:	Rattus norvegicus
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VATF_RAT.

Description	E-value	Query Range	Subject Range
ATP6V1F - ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F gi\|114658592, gi... - gi\|114658594\|ref\|XP_001160789.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal 14kD, V1 s...	179.0	[0..1]	[119..1]
VATF_BOVIN - V-type proton ATPase subunit F OS=Bos taurus GN=ATP6V1F PE=3 SV=2	177.0	[0..1]	[119..1]
gi\|57095928 - gi\|57095928\|ref\|XP_532431.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit F [Canis fami...	176.0	[0..1]	[119..1]
gi\|12834081 - gi\|12834081\|dbj\|BAB22780.1\| unnamed protein product [Mus musculus]	174.0	[0..1]	[119..1]
VATF1_DROPS - V-type proton ATPase subunit F 1 OS=Drosophila pseudoobscura pseudoobscura GN=Vha14 PE=2 SV=2 VATF1_DROPS - Vacuolar ATP synthase subunit F - Drosophila pseudoobscura (Fruit fly) gi\|195171787, gi... - gi\|195171787\|ref\|XP_002026685.1\| GL11862 [Drosophila persimilis], gi\|194111611\|gb\|EDW33654.1\| GL1186...	172.0	[0..2]	[118..6]
gi\|49523007, gi\|... - gi\|52345764\|ref\|NP_001004928.1\| MGC89120 protein [Xenopus (Silurana) tropicalis], gi\|49523007\|gb\|AAH...	171.0	[0..3]	[119..6]
gi\|194193659, gi... - gi\|195583692\|ref\|XP_002081650.1\| GD25605 [Drosophila simulans], gi\|194193659\|gb\|EDX07235.1\| GD25605 ... gi\|195488498, gi... - gi\|195488498\|ref\|XP_002092341.1\| GE14140 [Drosophila yakuba], gi\|194178442\|gb\|EDW92053.1\| GE14140 [D... gi\|194125972, gi... - gi\|195334675\|ref\|XP_002034002.1\| GM20126 [Drosophila sechellia], gi\|194125972\|gb\|EDW48015.1\| GM20126... Vha14-PA - The gene Vacuolar H<sup>+</sup> ATPase 14kD subunit is referred to in FlyBase by the symbol Dmel\Vha... gi\|194882763, gi... - gi\|194882763\|ref\|XP_001975480.1\| GG22339 [Drosophila erecta], gi\|190658667\|gb\|EDV55880.1\| GG22339 [D...	171.0	[0..2]	[118..6]
gi\|56207502, gi\|... - gi\|56207502\|emb\|CAI20699.1\| novel protein similar to vertebrate ATPase, H+ transporting, lysosomal 1...	171.0	[0..1]	[119..1]
VATF_AEDAE - V-type proton ATPase subunit F OS=Aedes aegypti GN=AAEL002464 PE=2 SV=1	169.0	[0..2]	[118..6]

Back

Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRGKLIAV IGDEDTVTGF LLGGIGELNK NRHPNFLVVE KDTTINEIED TFRQFLNRDD  60
   61 IGIILINQYI AEMVRHALDA HQRSIPAVLE IPSKEHPYDA AKDSILRRAK GMFTAEDLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	2qaiA
Description:	No description for 2qaiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits