YRC Public Data Repository - Protein Structure Prediction

Protein:	GHRL_RAT
Organism:	Rattus norvegicus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GHRL_RAT.

Description	E-value	Query Range	Subject Range
GHRL_FELCA - Appetite-regulating hormone OS=Felis catus GN=GHRL PE=1 SV=1	171.0	[0..1]	[117..1]
gi\|27357900 - gi\|27357900\|gb\|AAO06965.1\|AF442491_1 ghrelin preproprotein [Meriones unguiculatus]	168.0	[0..1]	[117..1]
gi\|34014150 - gi\|34014150\|gb\|AAQ56122.1\| preproghrelin [Anser sp.]	166.0	[0..1]	[116..1]
GHRL_CANLF - Appetite-regulating hormone OS=Canis lupus familiaris GN=GHRL PE=3 SV=1	165.0	[0..1]	[117..1]
gi\|34014154 - gi\|34014154\|gb\|AAQ56124.1\| preproghrelin [Dromaius novaehollandiae]	164.0	[0..1]	[116..1]
gi\|34014152 - gi\|34014152\|gb\|AAQ56123.1\| preproghrelin [Anas platyrhynchos]	162.0	[0..1]	[116..1]
gi\|50300448 - gi\|50300448\|dbj\|BAD29731.1\| preproghrelin-2 [Trachemys scripta elegans]	161.0	[0..1]	[114..1]
gi\|13603381 - gi\|13603381\|gb\|AAK30002.1\| preproghrelin des14Q [Sus scrofa]	153.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSATICSL LLLSMLWMDM AMAGSSFLSP EHQKAQQRKE SKKPPAKLQP RALEGWLHPE  60
   61 DRGQAEEAEE ELEIRFNAPF DVGIKLSGAQ YQQHGRALGK FLQDILWEEV KEAPANK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.154902
Match:	PF04643.3
Description:	No description for PF04643.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits