YRC Public Data Repository - Protein Structure Prediction

Protein:	RGS6_RAT
Organism:	Rattus norvegicus
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGS6_RAT.

Description	E-value	Query Range	Subject Range
RGS3 - regulator of G-protein signaling 3	102.0	[0..1]	[66..1104]
gi\|114626305, gi... - gi\|114626307\|ref\|XP_001154862.1\| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes], gi\|114...	102.0	[0..1]	[66..1104]
gi\|76625206 - gi\|76625206\|ref\|XP_877109.1\| PREDICTED: similar to regulator of G-protein signalling 3 isoform 1 iso...	102.0	[0..1]	[66..724]
RGS3_MOUSE - Regulator of G-protein signaling 3 OS=Mus musculus GN=Rgs3 PE=1 SV=2	102.0	[0..1]	[66..872]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAVQDLKKQP LQDVAKRVEE IWQEFLAPGA PSAINLDSHS YEITSQNVKD GGRYTFEDAQ  60
   61 EHIYKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.045757
Match:	2d9jA
Description:	No description for 2d9jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits