YRC Public Data Repository - Protein Structure Prediction

Protein:	HEPC_RAT
Organism:	Rattus norvegicus
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HEPC_RAT.

Description	E-value	Query Range	Subject Range
gi\|192281975 - gi\|192281975\|emb\|CAO00820.1\| hepcidin [Larimichthys crocea] gi\|83416593 - gi\|83416593\|gb\|ABC18307.1\| hepcidin [Pseudosciaena crocea]	114.0	[0..1]	[83..1]
gi\|62638172, gi\|... - gi\|62638172\|gb\|AAX92671.1\| hepcidin precursor [Scophthalmus maximus], gi\|62638170\|gb\|AAX92670.1\| hep...	111.0	[0..1]	[83..1]
gi\|54660716, gi\|... - gi\|71841551\|gb\|AAZ43072.1\| hepcidin precursor [Paralichthys olivaceus], gi\|54660716\|gb\|AAV37453.1\| h...	104.0	[0..1]	[83..1]
gi\|73765580 - gi\|73765580\|gb\|AAZ85124.1\| hepcidin precursor [Dicentrarchus labrax] HEPC_MORCS - Hepcidin OS=Morone chrysops x Morone saxatilis GN=hamp PE=1 SV=1 gi\|20799324, gi\|... - gi\|20799326\|gb\|AAM28440.1\|AF394246_1 hepcidin precursor [Morone chrysops], gi\|20799324\|gb\|AAM28439.1...	104.0	[0..1]	[83..1]
gi\|50312771 - gi\|50312771\|gb\|AAT74401.1\| DADS2 [Homo sapiens]	102.0	[0..1]	[80..1]
gi\|61657699 - gi\|61657699\|emb\|CAI65387.1\| hepcidin-like precursor [Scophthalmus maximus] gi\|57868097, gi\|... - gi\|57868097\|gb\|AAW57404.1\| hepcidin precursor [Lateolabrax japonicus], gi\|47028573\|gb\|AAT09138.1\| he...	98.0	[0..1]	[83..1]
HEPC_PONAB - Hepcidin OS=Pongo abelii GN=HAMP PE=3 SV=1 HEPC_PONPY - Hepcidin precursor - Pongo pygmaeus (Orangutan)	97.0	[0..1]	[84..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSTRIQAA CLLLLLLASL SSGAYLRQQT RQTTALQPWH GAESKTDDSA LLMLKRRKRD  60
   61 TNFPICLFCC KCCKNSSCGL CCIT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.200659
Match:	PF06446.3
Description:	No description for PF06446.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits