| Protein: | gi|125553558 |
| Organism: | Oryza sativa Indica Group |
| Length: | 766 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125553558.
| Description | E-value | Query Range |
Subject Range |
|
|
642.0 | [0..1] | [766..1] |
|
Region A: Residues: [1-194] |
1 11 21 31 41 51
| | | | | |
1 MATVSDIGLS AAINVSMAVA FLLVFAFLRL QPINDRVYFP KWYLRGMRDS PVSSGAAVQK 60
61 VVNLNMRSYL KFLSWMPAAL KMPEDELINH AGLDSAVYLR IYLTGIKIFV PISILASLVL 120
121 FPVNWTNDTL DSMKVVHSKI DKLSISNIPY GSNRFVTHLV MAYAVTFWTC YVLFREYEII 180
181 TTMRLRFLAS EKRR
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [195-361] |
1 11 21 31 41 51
| | | | | |
1 PDQFTVLVRN IPPDPDESIS ELVEHFFLVN HPDHYLRHQV VYNANKLADL VEKKKKLQNW 60
61 LDYYQLKYER NPSKRPTTKT GFLGCFGSEV DAIEYYKAEI EKIGKEEADE RQKIMKDPQS 120
121 AVPAAFVSFR SRWGAAVCAQ TQQTSNPTVW ITEWAPEPRD VYWNNLS
|
| Detection Method: | |
| Confidence: | 1.15 |
| Match: | 1zh5A |
| Description: | Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
|
Region A: Residues: [362-497] |
1 11 21 31 41 51
| | | | | |
1 IPFVSLTVRR LIVAVAFFFL NFFYVIPIAF VQSLASLEGI EKALPFLKPL IKIDVIKSFI 60
61 QGFLPGIALK VFLILLPTIL MFMSKFEGLI SQSSLERRSA SKYYIFLFFN VFLGSIVTGS 120
121 ALDQLKAYIH QSANEI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [498-662] |
1 11 21 31 41 51
| | | | | |
1 PRTIGVAIPM RATFFITYVM VDGWTGVAGE ILRLRALIIF HLKNFFLVKT EKDREEAMDP 60
61 GSICFDWCEP RIQLYFLLGL VYAVVTPLLL PFILVFFGLA YVVYRHQIIN VYNQQYESGA 120
121 QFWPSVHGRI IIALIVSQLL LIGLLSTKGF EETTPVLVVL PVLTF
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [663-766] |
1 11 21 31 41 51
| | | | | |
1 WFYKYCKNRF EPAFVRNPLQ EAMRKDTLER AREPTFDLKA YLANAYLHPV FKGREEEDNM 60
61 SISEDVGMEE VIVPTKRQSR RNTPAQSKYE GSDTLSLPET VHER
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
