Protein: | gi|125553558 |
Organism: | Oryza sativa Indica Group |
Length: | 766 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125553558.
Description | E-value | Query Range |
Subject Range |
|
642.0 | [0..1] | [766..1] |
Region A: Residues: [1-194] |
1 11 21 31 41 51 | | | | | | 1 MATVSDIGLS AAINVSMAVA FLLVFAFLRL QPINDRVYFP KWYLRGMRDS PVSSGAAVQK 60 61 VVNLNMRSYL KFLSWMPAAL KMPEDELINH AGLDSAVYLR IYLTGIKIFV PISILASLVL 120 121 FPVNWTNDTL DSMKVVHSKI DKLSISNIPY GSNRFVTHLV MAYAVTFWTC YVLFREYEII 180 181 TTMRLRFLAS EKRR |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [195-361] |
1 11 21 31 41 51 | | | | | | 1 PDQFTVLVRN IPPDPDESIS ELVEHFFLVN HPDHYLRHQV VYNANKLADL VEKKKKLQNW 60 61 LDYYQLKYER NPSKRPTTKT GFLGCFGSEV DAIEYYKAEI EKIGKEEADE RQKIMKDPQS 120 121 AVPAAFVSFR SRWGAAVCAQ TQQTSNPTVW ITEWAPEPRD VYWNNLS |
Detection Method: | |
Confidence: | 1.15 |
Match: | 1zh5A |
Description: | Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 0.787118623292657 | bayes_pls_golite062009 |
nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
Region A: Residues: [362-497] |
1 11 21 31 41 51 | | | | | | 1 IPFVSLTVRR LIVAVAFFFL NFFYVIPIAF VQSLASLEGI EKALPFLKPL IKIDVIKSFI 60 61 QGFLPGIALK VFLILLPTIL MFMSKFEGLI SQSSLERRSA SKYYIFLFFN VFLGSIVTGS 120 121 ALDQLKAYIH QSANEI |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [498-662] |
1 11 21 31 41 51 | | | | | | 1 PRTIGVAIPM RATFFITYVM VDGWTGVAGE ILRLRALIIF HLKNFFLVKT EKDREEAMDP 60 61 GSICFDWCEP RIQLYFLLGL VYAVVTPLLL PFILVFFGLA YVVYRHQIIN VYNQQYESGA 120 121 QFWPSVHGRI IIALIVSQLL LIGLLSTKGF EETTPVLVVL PVLTF |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [663-766] |
1 11 21 31 41 51 | | | | | | 1 WFYKYCKNRF EPAFVRNPLQ EAMRKDTLER AREPTFDLKA YLANAYLHPV FKGREEEDNM 60 61 SISEDVGMEE VIVPTKRQSR RNTPAQSKYE GSDTLSLPET VHER |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.