YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114593389, gi...
Organism:	Pan troglodytes
Length:	500 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114593389, gi....

Description	E-value	Query Range	Subject Range
SUH_XENLA - Suppressor of hairless protein homolog OS=Xenopus laevis GN=rbpj PE=1 SV=1	0.0	[5..500]	[3..501]
RBPJ - recombination signal binding protein for immunoglobulin kappa J region	0.0	[1..483]	[1..483]
SUH_MOUSE - Recombining binding protein suppressor of hairless OS=Mus musculus GN=Rbpj PE=1 SV=1 gi\|238153 - gi\|238153\|gb\|AAB20195.1\| J kappa recombination signal sequence binding protein; RBP-2 [Mus sp.]	0.0	[1..483]	[27..509]
gi\|109500651, gi... - gi\|149047201\|gb\|EDL99870.1\| recombining binding protein suppressor of hairless (Drosophila) (predict...	0.0	[1..483]	[27..509]
gi\|73951596 - gi\|73951596\|ref\|XP_536269.2\| PREDICTED: similar to recombining binding protein suppressor of hairles...	0.0	[20..500]	[6..486]
gi\|109073928 - gi\|109073928\|ref\|XP_001084065.1\| PREDICTED: similar to recombining binding protein suppressor of hai...	0.0	[20..483]	[6..469]

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Predicted Domain #1

Region A:
Residues: [1-500]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHTEGSPAE EPPAHAPSPG KFGERPPPKR LTREAMRNYL KERGDQTVLI LHAKVAQKSY  60
   61 GNEKRFFCPP PCVYLMGSGW KKKKEQMERD GCSEQESQPC AFIGIGNSDQ EMQQLNLEGK 120
  121 NYCTAKTLYI SDSDKRKHFM LSVKMFYGNS DDIGVFLSKR IKVISKPSKK KQSLKNADLC 180
  181 IASGTKVALF NRLRSQTVST RYLHVEGGNF HASSQQWGAF FIHLLDDDES EGEEFTVRDG 240
  241 YIHYGQTVKL VCSVTGMALP RLIIRKVDKQ TALLDADDPV SQLHKCAFYL KDTERMYLCL 300
  301 SQERIIQFQA TPCPKEPNKE MINDGASWTI ISTDKAEYTF YEGMGPVLAP VTPVPVVESL 360
  361 QLNGGGDVAM LELTGQNFTP NLRVWFGDVE AETMYRCGES MLCVVPDISA FREGWRWVRQ 420
  421 PVQVPVTLVR NDGIIYSTSL TFTYTPEPGP RPHCSAAGAI LRANSSQVPP NESNTNSEGS 480
  481 YTNASTNSTS VTSSTATVVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2f8xC
Description:	No description for 2f8xC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits