YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|116309137
Organism: Oryza sativa Indica Group
Length: 316 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116309137.

Description E-value Query
Range
Subject
Range
gi|13430738 - gi|13430738|gb|AAK25991.1|AF360281_1 unknown protein [Arabidopsis thaliana]
415.0 [0..1] [315..4]

Back

Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYIRDEDTR LETTRARLSN VLKRHEDLKE RLSRDSDKLI FERLQREFEA ARTAQTEEIP  60
   61 IDDEQWNDGL LATIREKVHM EADRKAMANQ A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [92-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVPADPQFQS RTTYRVKNKV IYCLDGARIG IQYETYFAGE PCEIYHCVLE SKSFLEKMTV  60
   61 IEHTLPFFLP IREVESEFLS SNAIKFIDHL EEILQSYVDR REQVRLIKEL YGNQIGELFH 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.481486
Match: PF09496.1
Description: No description for PF09496.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [213-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSYNLIEFVM EDFECKVTVS IRYSDLLFTL PSQARVLAWP LRSSRGISVT ERRASRSASA  60
   61 QLVPFRLPYA EDALKTLSLP EAFAEIVLSL PRALKRILSS QESD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle