YRC Public Data Repository - Protein Structure Prediction

Protein:	NNAT_RAT
Organism:	Rattus norvegicus
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NNAT_RAT.

Description	E-value	Query Range	Subject Range
NNAT_MESAU - Neuronatin OS=Mesocricetus auratus GN=NNAT PE=3 SV=1 NNAT_MOUSE - Neuronatin OS=Mus musculus GN=Nnat PE=2 SV=2	141.0	[0..10]	[81..10]
NNAT_BOVIN - Neuronatin OS=Bos taurus GN=NNAT PE=3 SV=1 NNAT_PIG - Neuronatin OS=Sus scrofa GN=NNAT PE=3 SV=1	139.0	[0..10]	[81..10]
NNAT - neuronatin gi\|73991946 - gi\|73991946\|ref\|XP_852537.1\| PREDICTED: similar to Neuronatin isoform 1 [Canis familiaris] gi\|149733255 - gi\|149733255\|ref\|XP_001502376.1\| PREDICTED: similar to neuronatin isoform 1 [Equus caballus] HGNC:7860\|MIM:60... - null, null CCDS13296.1_1 - null ENSCJAT00000042311 - null gi\|109092101, gi... - gi\|109092101\|ref\|XP_001091703.1\| PREDICTED: similar to Neuronatin isoform 1 [Macaca mulatta], gi\|109... gi\|114681923 - gi\|114681923\|ref\|XP_001141473.1\| PREDICTED: similar to neuronatin alpha isoform 1 [Pan troglodytes]	138.0	[0..10]	[81..10]
gi\|755144, gi\|32... - gi\|755144\|gb\|AAA92999.1\| neuronatin beta, pir\|\|I60594 neuronatin beta - rat, gi\|32140178\|ref\|NP_859...	76.0	[0..10]	[81..10]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVAAASAE LLIIGWYIFR VLLQVFLECC IYWVGFAFRN PPGTQPIARS EVFRYSLQKL  60
   61 AHTVSRTGRQ VLGERRHRAP N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits