YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|114555595
Organism:	Pan troglodytes
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|114555595.

Description	E-value	Query Range	Subject Range
gi\|114555597 - gi\|114555597\|ref\|XP_513325.2\| PREDICTED: axonemal dynein light chain isoform 2 [Pan troglodytes]	0.0	[1..269]	[1..269]
gi\|109002119 - gi\|109002119\|ref\|XP_001111996.1\| PREDICTED: similar to axonemal dynein light chain [Macaca mulatta]	0.0	[1..280]	[1..280]
gi\|57997554 - gi\|57997554\|emb\|CAI46082.1\| hypothetical protein [Homo sapiens]	0.0	[1..280]	[1..280]
gi\|76614515 - gi\|76614515\|ref\|XP_607493.2\| PREDICTED: similar to dynein, axonemal, light intermediate polypeptide ...	0.0	[23..280]	[1..258]
IDLC_MACFA - Axonemal dynein light intermediate polypeptide 1 OS=Macaca fascicularis GN=DNALI1 PE=2 SV=1	0.0	[23..280]	[1..258]
IDLC_RAT - Axonemal dynein light intermediate polypeptide 1 OS=Rattus norvegicus GN=Dnali1 PE=2 SV=1	0.0	[23..280]	[1..258]
IDLC_MOUSE - Axonemal dynein light intermediate polypeptide 1 OS=Mus musculus GN=Dnali1 PE=1 SV=1	0.0	[23..280]	[1..258]
IDLC_STRPU - 33 kDa inner dynein arm light chain, axonemal OS=Strongylocentrotus purpuratus PE=1 SV=1	0.0	[23..280]	[1..259]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTANKAHTG QGSCWVATLA SAMIPPADSL LKYDTPVLVS RNTEKRSPKA RLLKVSPQQP  60
   61 GPSGSAPQPP KTKLPSTPCV PDPTKQAEEI LNAILPPREW VEDTQLWIQQ VSSTPSTRMD 120
  121 VVHLQEQLDL KLQQRQARET GICPVRRELY SQCFDELIRE VTINCAERGL LLLRVRDEIR 180
  181 MTIAAYQTLY ESSVAFGMRK ALQAEQGKSD MERKIAELET EKRDLERQVN EQKAKCEATE 240
  241 KRESERRQVE EKKHNEEIQF LKRTNQQLKA QLEGIIAPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.51
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits