YRC Public Data Repository - Protein Structure Prediction

Protein:	PP14A_RAT
Organism:	Rattus norvegicus
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PP14A_RAT.

Description	E-value	Query Range	Subject Range
PPP1R14A - protein phosphatase 1, regulatory (inhibitor) subunit 14A gi\|123982630, gi... - gi\|123997297\|gb\|ABM86250.1\| protein phosphatase 1, regulatory (inhibitor) subunit 14A [synthetic con...	197.0	[0..1]	[147..1]
PP14A_PIG - Protein phosphatase 1 regulatory subunit 14A OS=Sus scrofa GN=CPI17 PE=1 SV=1	191.0	[0..1]	[147..1]
gi\|76641562 - gi\|76641562\|ref\|XP_872227.1\| PREDICTED: similar to 17-kDa PKC-potentiated inhibitory protein of PP1 ...	191.0	[0..1]	[147..1]
PP14A_MOUSE - Protein phosphatase 1 regulatory subunit 14A OS=Mus musculus GN=Ppp1r14a PE=1 SV=1	191.0	[0..1]	[147..1]
gi\|61370248, gi\|... - gi\|61370248\|gb\|AAX43462.1\| LIM domain kinase 2 [synthetic construct], gi\|61370243\|gb\|AAX43461.1\| LIM...	181.0	[0..10]	[132..561]
gi\|51950268, gi\|... - gi\|51950268\|gb\|AAH82395.1\| MGC81874 protein [Xenopus laevis], gi\|147898606\|ref\|NP_001087867.1\| MGC81...	168.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQRLGKRV LSKLQSPSRA RGPGGSPSGL QKRHARVTVK YDRRELQRRL DVEKWIDGRL  60
   61 EELYRGREAD MPDEVNIDEL LELDSEEERC RKIRGLLEAC LNPTEDFVQE LLAKLRGLHK 120
  121 QPGFPQPSPS DDPSLSPRQD PAHTAPP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1j2mA
Description:	Myosin phosphatase inhibitor 17kDa protein, CPI-17
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits