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View Structure Prediction Details

Protein: APOA2_RAT
Organism: Rattus norvegicus
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APOA2_RAT.

Description E-value Query
Range
Subject
Range
APOA2_MOUSE - Apolipoprotein A-II OS=Mus musculus GN=Apoa2 PE=1 SV=2
173.0 [0..1] [102..1]
gi|74006267 - gi|74006267|ref|XP_536139.2| PREDICTED: similar to Apolipoprotein A-II precursor (Apo-AII) (ApoA-II)...
172.0 [0..1] [98..101]
gi|671882 - gi|671882|emb|CAA28583.1| apolipoprotein [Homo sapiens]
158.0 [0..1] [98..1]
APOA2_PANPA - Apolipoprotein A-II OS=Pan paniscus GN=APOA2 PE=1 SV=1
APOA2_PANTR - Apolipoprotein A-II OS=Pan troglodytes GN=APOA2 PE=1 SV=1
157.0 [0..1] [98..1]
APOA2_MACFA - Apolipoprotein A-II OS=Macaca fascicularis GN=APOA2 PE=1 SV=2
gi|109017812, gi... - gi|109017816|ref|XP_001117979.1| PREDICTED: apolipoprotein A-II isoform 3 [Macaca mulatta], gi|10901...
157.0 [0..1] [98..1]
gi|30583799, gi|... - gi|60653525|gb|AAX29456.1| apolipoprotein A-II [synthetic construct], gi|60653523|gb|AAX29455.1| apo...
156.0 [0..1] [98..1]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLAMVALL VTICSLEGAL VRRQAAETDV QTLFSQYLQS LTDYGKDLME KAQPSEIQNQ  60
   61 AKAYFQNAQE RLTPFVQRTG TNLMDFLSRL MSPEEKPAPA AK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.30103
Match: 1l6lA
Description: Apolipoprotein A-II
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle