YRC Public Data Repository - Protein Structure Prediction

Protein:	APOA2_RAT
Organism:	Rattus norvegicus
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APOA2_RAT.

Description	E-value	Query Range	Subject Range
APOA2_MOUSE - Apolipoprotein A-II OS=Mus musculus GN=Apoa2 PE=1 SV=2	173.0	[0..1]	[102..1]
gi\|74006267 - gi\|74006267\|ref\|XP_536139.2\| PREDICTED: similar to Apolipoprotein A-II precursor (Apo-AII) (ApoA-II)...	172.0	[0..1]	[98..101]
gi\|671882 - gi\|671882\|emb\|CAA28583.1\| apolipoprotein [Homo sapiens]	158.0	[0..1]	[98..1]
APOA2_PANPA - Apolipoprotein A-II OS=Pan paniscus GN=APOA2 PE=1 SV=1 APOA2_PANTR - Apolipoprotein A-II OS=Pan troglodytes GN=APOA2 PE=1 SV=1	157.0	[0..1]	[98..1]
APOA2_MACFA - Apolipoprotein A-II OS=Macaca fascicularis GN=APOA2 PE=1 SV=2 gi\|109017812, gi... - gi\|109017816\|ref\|XP_001117979.1\| PREDICTED: apolipoprotein A-II isoform 3 [Macaca mulatta], gi\|10901...	157.0	[0..1]	[98..1]
gi\|30583799, gi\|... - gi\|60653525\|gb\|AAX29456.1\| apolipoprotein A-II [synthetic construct], gi\|60653523\|gb\|AAX29455.1\| apo...	156.0	[0..1]	[98..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLAMVALL VTICSLEGAL VRRQAAETDV QTLFSQYLQS LTDYGKDLME KAQPSEIQNQ  60
   61 AKAYFQNAQE RLTPFVQRTG TNLMDFLSRL MSPEEKPAPA AK

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Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1l6lA
Description:	Apolipoprotein A-II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits