YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|125546494
Organism: Oryza sativa Indica Group
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125546494.

Description E-value Query
Range
Subject
Range
gi|50920171, gi|... - gi|50920171|ref|XP_470446.1| putative p21 C-terminal-binding protein, C-terminus truncated due to al...
324.0 [0..1] [281..1]

Back

Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGDRKRPAP FAGFSPFARS LLFSASSSKP LPPPEDPPAA AADEIPSGIA GSSRDMPPPK  60
   61 RAKRAEPSSD EERYSSDDES 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSSDSDDSDD ASEELDTVQA DFAFYDPKPG DFHGVKLLLK TYLDSKPWDL TGFVDLILEQ  60
   61 TTVGTVVKIA DDEEDGEGNG ADGSSTGGND DLFGLISVLN LGRYSEHRCM KDLKDYLLAV 120
  121 CGDKDTKKKL KQMLGD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [217-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAPDVGLLVC RRFVNFPYEL VPKMYESLFD EVSWATEDEP TQELRDSFRF KQYLMVVRVL  60
   61 ERKTPAKQKA KNSTEEDEPI IYPKLEDEIF RELSSWSFTF PIRSEQSAQQ EMKNYKEMGL 120
  121 VMAVKAEAIP KFRKKLEDLL SE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle