YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: LBD6_ORYSI
Organism: Oryza sativa Indica Group
Length: 269 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LBD6_ORYSI.

Description E-value Query
Range
Subject
Range
LBD6_MAIZE - LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1
338.0 [0..6] [269..2]

Back

Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSASSVP APSGSVITIA SASASAAANT AACGTGSPCA ACKFLRRKCQ PDCVFAPYFP  60
   61 PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY EADMRLRDPV YGCVAIISIL 120
  121 QRNLRQLQQD LARAKFELSK YQQAAAAAAA ASASTGTN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 62.387216
Match: PF03195.5
Description: No description for PF03195.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGPHSMAEFI GNAVPNGAQS FINVGHSAAL ASVGGAAACF GQEQQFSAVH MLSRSYEGEP  60
   61 IARLGGNGGY EFGYSTSMAG GGHMSGLGAL GGAPFLKSGI AGSDERQGAG Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle