YRC Public Data Repository - Protein Structure Prediction

Protein:	GLRX1_RAT
Organism:	Rattus norvegicus
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLRX1_RAT.

Description	E-value	Query Range	Subject Range
gi\|116310771, gi... - gi\|125548975\|gb\|EAY94797.1\| hypothetical protein OsI_16580 [Oryza sativa Indica Group], gi\|116310771... GRXC6_ORYSA, GLR... - Glutaredoxin-C6 (Glutaredoxin-C2 homolog 1) - Oryza sativa (Rice), (P55142) Glutaredoxin GRXC6_ORYSJ - Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2	128.0	[0..1]	[105..1]
GLRX_ORYSA - (P55142) Glutaredoxin	128.0	[0..1]	[105..1]
gi\|2724050, gi\|2... - gi\|2724056\|gb\|AAB92658.1\| glutaredoxin type I [Fritillaria agrestis], gi\|2724054\|gb\|AAB92657.1\| glut...	127.0	[0..1]	[105..1]
gi\|12746263 - gi\|12746263\|gb\|AAK07419.1\|AF319950_1 glutaredoxin [Rattus norvegicus]	126.0	[0..1]	[107..1]
gi\|30584863, gi\|... - gi\|60653469\|gb\|AAX29429.1\| glutaredoxin [synthetic construct], gi\|30584863\|gb\|AAP36684.1\| Homo sapie...	125.0	[0..1]	[107..1]
gi\|20141083 - gi\|20141083\|gb\|AAK53442.2\|AF374461_1 glutaredoxin [Deschampsia antarctica]	125.0	[0..1]	[105..1]
gi\|643695 - gi\|643695\|dbj\|BAA04769.1\| glutaredoxin [Homo sapiens]	125.0	[0..1]	[106..1]
GRXC2_ARATH - Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1	124.0	[0..1]	[105..1]
gi\|39589296, gi\|... - gi\|39589296\|emb\|CAE74325.1\| Hypothetical protein CBG22036 [Caenorhabditis briggsae], gi\|187021940\|em... gi\|157744915 - gi\|157744915\|ref\|XP_001667554.1\| Hypothetical protein CBG22036 [Caenorhabditis briggsae AF16]	124.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQEFVNCKI QSGKVVVFIK PTCPYCRKTQ EILSQLPFKR GLLEFVDITA TNNTNAIQDY  60
   61 LQQLTGARTV PRVFIGKDCI GGCSDLLSMQ QNGELTARLK QIGALQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.221849
Match:	1jhbA
Description:	HUMAN GLUTAREDOXIN IN FULLY REDUCED FORM, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits