YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123997603, gi...
Organism:	synthetic construct
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123997603, gi....

Description	E-value	Query Range	Subject Range
gi\|114638606 - gi\|114638606\|ref\|XP_508559.2\| PREDICTED: AYP1 protein [Pan troglodytes]	1.0E-66	[1..164]	[1..164]
gi\|10436946 - gi\|10436946\|dbj\|BAB14937.1\| unnamed protein product [Homo sapiens]	3.0E-65	[1..164]	[1..163]
gi\|109109538 - gi\|109109538\|ref\|XP_001085695.1\| PREDICTED: similar to AYP1 protein isoform 2 [Macaca mulatta]	3.0E-65	[1..164]	[1..164]
RNH2C_MOUSE - Ribonuclease H2 subunit C OS=Mus musculus GN=Rnaseh2c PE=1 SV=1	2.0E-57	[1..164]	[1..166]
gi\|73983076 - gi\|73983076\|ref\|XP_852826.1\| PREDICTED: similar to AYP1 protein isoform 1 [Canis familiaris]	7.0E-52	[1..164]	[1..168]
RNH2C_BOVIN - Ribonuclease H2 subunit C OS=Bos taurus GN=RNASEH2C PE=2 SV=1	1.0E-48	[1..164]	[1..165]
gi\|28923812, gi\|... - gi\|32408179\|ref\|XP_324571.1\| predicted protein [Neurospora crassa], gi\|28923812\|gb\|EAA32977.1\| predi... gi\|85106579 - gi\|85106579\|ref\|XP_962213.1\| hypothetical protein NCU05214 [Neurospora crassa OR74A]	5.0E-41	[28..159]	[24..168]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGDEAAIE RHRVHLRSAT LRDAVPATLH LLPCEVAVDG PAPVGRFFTP AIRQGPEGLE  60
   61 VSFRGRCLRG EEVAVPPGLV GYVMVTEEKK VSMGKPDPLR DSGTDDQEEE PLERDFDRFI 120
  121 GATANFSRFT LWGLETIPGP DAKVRGALTW PSLAAAIHAQ VPED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.455932
Match:	PF08615.2
Description:	No description for PF08615.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits