YRC Public Data Repository - Protein Structure Prediction

Protein:	CEBPG_RAT
Organism:	Rattus norvegicus
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CEBPG_RAT.

Description	E-value	Query Range	Subject Range
gi\|2801478, gi\|9... - gi\|9626985\|ref\|NP_056890.1\| gag polyprotein [Murine osteosarcoma virus], gi\|2801478\|gb\|AAC82572.1\| p... gi\|332196 - gi\|332196\|gb\|AAA46573.1\| gag-fos fusion protein [FBR murine osteosarcoma virus]	108.0	[0..1]	[149..359]
gi\|114581857 - gi\|114581857\|ref\|XP_001152057.1\| PREDICTED: chimerin (chimaerin) 1 isoform 6 [Pan troglodytes]	107.0	[0..20]	[144..309]
gi\|51789, gi\|110565 - gi\|51789\|emb\|CAA39116.1\| immunoglobulin enhancer binding protein [Mus musculus], pir\|\|A36673 immunog... Contaminant_A366... - owl\|A36673\| immunoglobulin enhancer-binding protein 1 - mouse (fragment)	105.0	[0..1]	[150..69]
FOSX_MSVFR - Transforming protein v-Fos/v-Fox OS=FBR murine osteosarcoma virus GN=FOS-FOX PE=3 SV=1	104.0	[0..1]	[149..49]
gi\|109461720 - gi\|109461720\|ref\|XP_001079636.1\| PREDICTED: similar to CCAAT/enhancer-binding protein gamma (C/EBP g...	103.0	[0..1]	[150..194]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLSQPAST AGVNGISVIH TQAHASGLQQ VPQLVPAGPG GGGKAVPPSK QSKKSSPMDR  60
   61 NSDEYRQRRE RNNMAVKKSR LKSKQKAQDT LQRVNQLKEE NERLEAKIKL LTKELSVLKD 120
  121 LFLEHAHNLA DNVQPISTET TVANSDNTGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.30103
Match:	1hjbA
Description:	C/ebp beta
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits