YRC Public Data Repository - Protein Structure Prediction

Protein:	OREX_RAT
Organism:	Rattus norvegicus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OREX_RAT.

Description	E-value	Query Range	Subject Range
OREX_MOUSE - Orexin OS=Mus musculus GN=Hcrt PE=2 SV=1	187.0	[0..1]	[130..1]
OREX_CANLF - Orexin OS=Canis lupus familiaris GN=HCRT PE=3 SV=1	181.0	[0..1]	[130..1]
gi\|109115468 - gi\|109115468\|ref\|XP_001108991.1\| PREDICTED: similar to orexin precursor [Macaca mulatta]	176.0	[0..1]	[130..1]
gi\|76644868 - gi\|76644868\|ref\|XP_609741.2\| PREDICTED: hypocretin (orexin) neuropeptide precursor [Bos taurus]	175.0	[0..1]	[130..1]
gi\|114667299 - gi\|114667299\|ref\|XP_001166578.1\| PREDICTED: orexin [Pan troglodytes]	168.0	[0..1]	[130..1]
gi\|108752126, gi... - gi\|208966520\|dbj\|BAG73274.1\| hypocretin (orexin) neuropeptide precursor [synthetic construct], gi\|10... HCRT - hypocretin (orexin) neuropeptide precursor	165.0	[0..1]	[130..1]
OREX_PIG - Orexin OS=Sus scrofa GN=HCRT PE=2 SV=1	165.0	[0..1]	[130..1]
gi\|45383750, gi\|... - gi\|45383750\|ref\|NP_989516.1\| hypocretin (orexin) neuropeptide [Gallus gallus], gi\|26453322\|dbj\|BAC43...	137.0	[0..33]	[125..29]

Back

Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPSTKVPW AAVTLLLLLL LPPALLSLGV DAQPLPDCCR QKTCSCRLYE LLHGAGNHAA  60
   61 GILTLGKRRP GPPGLQGRLQ RLLQANGNHA AGILTMGRRA GAELEPYPCP GRRCPTATAT 120
  121 ALAPRGGSRV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	103.21467
Match:	PF02072.6
Description:	No description for PF02072.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits