YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|109508427, gi...
Organism:	Rattus norvegicus
Length:	62 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109508427, gi....

Description	E-value	Query Range	Subject Range
gi\|109128677 - gi\|109128677\|ref\|XP_001097779.1\| PREDICTED: hypothetical protein [Macaca mulatta]	70.0	[0..1]	[61..163]
gi\|802154, gi\|10... - gi\|802154\|gb\|AAB32777.1\| metallothionein; MT [Carassius auratus], pir\|\|JC2419 metallothionein - gold...	66.0	[0..6]	[61..4]
MTA_ONCMY - Metallothionein A OS=Oncorhynchus mykiss GN=mta PE=3 SV=1 MTA_SALSA - Metallothionein A OS=Salmo salar GN=mta PE=3 SV=1 MTA_SALAL - Metallothionein A OS=Salvelinus alpinus GN=mta PE=3 SV=1 gi\|74419050 - gi\|74419050\|gb\|ABA03253.1\| metallothionein A [Oncorhynchus nerka]	66.0	[0..6]	[61..4]
gi\|113426454 - gi\|113426454\|ref\|XP_944705.2\| PREDICTED: similar to Metallothionein-2 (MT-2) (Metallothionein-II) (M...	65.0	[0..6]	[61..124]
gi\|30421163 - gi\|30421163\|gb\|AAP31403.1\| metallothionein A [Salvelinus alpinus]	63.0	[0..6]	[61..4]
gi\|119910068, gi... - gi\|168804000\|ref\|NP_001108331.1\| metallothionein 4 [Bos taurus], gi\|119910068\|ref\|XP_001251498.1\| PR...	59.0	[0..1]	[62..1]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPGECTCMS GGICICGDNC KCTTCSCKTC RKSCCPCCPP GCAKCARGCI CKGGSDKCSC  60
   61 CP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.39794
Match:	4mt2A
Description:	COMPARISON OF THE NMR SOLUTION STRUCTURE AND THE X-RAY CRYSTAL STRUCTURE OF RAT METALLOTHIONEIN-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits