YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|120602882, gi...
Organism:	Desulfovibrio vulgaris DP4
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|120602882, gi....

Description	E-value	Query Range	Subject Range
gi\|20091565, gi\|... - gi\|20091565\|ref\|NP_617640.1\| nitroreductase [Methanosarcina acetivorans C2A], gi\|19916724\|gb\|AAM0612...	6.0E-39	[1..274]	[4..275]
gi\|73670733, gi\|... - gi\|73670733\|ref\|YP_306748.1\| nitroreductase [Methanosarcina barkeri str. Fusaro], gi\|72397895\|gb\|AAZ...	6.0E-38	[1..274]	[2..273]
gi\|21229411, gi\|... - gi\|21229411\|ref\|NP_635333.1\| ferredoxin [Methanosarcina mazei Go1], gi\|20908005\|gb\|AAM33005.1\| Ferre...	4.0E-37	[1..274]	[1..272]
gi\|88945918, gi\|... - gi\|88945918\|ref\|ZP_01149057.1\| nitroreductase family protein [Desulfotomaculum reducens MI-1], gi\|88...	2.0E-36	[1..274]	[1..274]
gi\|39982398, gi\|... - gi\|39995635\|ref\|NP_951586.1\| nitroreductase family protein [Geobacter sulfurreducens PCA], gi\|399823...	4.0E-36	[1..274]	[1..274]
gi\|85858670, gi\|... - gi\|85858670\|ref\|YP_460872.1\| ferridoxin [Syntrophus aciditrophicus SB], gi\|85721761\|gb\|ABC76704.1\| f...	5.0E-35	[4..274]	[5..275]
gi\|88602815, gi\|... - gi\|88602815\|ref\|YP_502993.1\| nitroreductase [Methanospirillum hungatei JF-1], gi\|88188277\|gb\|ABD4127...	8.0E-33	[1..274]	[1..274]
gi\|91711512, gi\|... - gi\|91772497\|ref\|YP_565189.1\| nitroreductase [Methanococcoides burtonii DSM 6242], gi\|91711512\|gb\|ABE...	1.0E-32	[1..274]	[1..274]
gi\|78219861, gi\|... - gi\|78357456\|ref\|YP_388905.1\| nitroreductase family protein [Desulfovibrio desulfuricans subsp. desul...	2.0E-32	[1..273]	[1..273]
gi\|48845025, gi\|... - gi\|78224188\|ref\|YP_385935.1\| nitroreductase [Geobacter metallireducens GS-15], gi\|78195443\|gb\|ABB332...	7.0E-32	[1..274]	[1..271]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFEVDAQR CKRDDICIAE CPIHIIISDR DSGVPKMRDG AESVCIRCGH CVAVCPHGAV  60
   61 RIEDMPIEAF TPVDKSLAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.045757
Match:	1b0pA
Description:	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I; Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI; Pyruvate-ferredoxin oxidoreductase, PFOR, domain II; Pyruvate-ferredoxin oxidoreductase, PFOR, domain III; Pyruvate-ferredoxin oxidoreductase, PFOR, domain V
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.858923918006343	bayes_pls_golite062009
oxidoreductase activity	0.100797464100664	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [80-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DARQAEQFLR GRRSIRTFRD TPVPHDQLAQ IMETVRWAPS ASHKQPVHWV MVETPSAVRE  60
   61 MAELVVDWMT EVRKENPELA RRFNVAGLIA GWRKGQDLIL RGAPHLAVAW TEPAATWPEV 120
  121 DCAVALTYLE LAAHAHGVGC CWAGYFTYAA NAYGPLREAL GLPQDARVCG GQMMGYARFR 180
  181 YRRLPWRKPL AIDWK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	1bkjA
Description:	Flavin reductase P (NADPH:FMN oxidoreductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48193963005483	bayes_pls_golite062009
oxidoreductase activity	0.480695441264854	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: