YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPA_DESVV
Organism:	Desulfovibrio vulgaris DP4
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPA_DESVV.

Description	E-value	Query Range	Subject Range
DAPA_AQUAE - Dihydrodipicolinate synthase OS=Aquifex aeolicus GN=dapA PE=1 SV=1 DAPA_AQUAE - 4-hydroxy-tetrahydrodipicolinate synthase OS=Aquifex aeolicus (strain VF5) GN=dapA PE=1 SV=1	0.0	[3..291]	[2..290]
DAPA_BARBK - 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN...	0.0	[3..292]	[2..292]
DAPA_GEOUR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=dapA PE=3 SV=1	0.0	[3..292]	[2..290]
DAPA_METJA - Dihydrodipicolinate synthase OS=Methanocaldococcus jannaschii GN=dapA PE=1 SV=1 DAPA_METJA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM ...	0.0	[3..292]	[2..289]
DAPA_GEOMG - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	0.0	[3..292]	[2..290]
DAPA_METKA - Dihydrodipicolinate synthase OS=Methanopyrus kandleri GN=dapA PE=3 SV=1 DAPA_METKA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 963...	0.0	[2..292]	[4..296]
DAPA_GEOSL - Dihydrodipicolinate synthase OS=Geobacter sulfurreducens GN=dapA PE=3 SV=1 DAPA_GEOSL - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127...	0.0	[3..292]	[2..290]
DAPA_CAUCR - Dihydrodipicolinate synthase OS=Caulobacter crescentus GN=dapA PE=3 SV=1 DAPA_CAUCR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=da...	0.0	[3..291]	[6..293]
gi\|91202476 - gi\|91202476\|emb\|CAJ72115.1\| strongly similar to dihydropicolinate synthase (DHDPS) [Candidatus Kuene...	3.0E-99	[3..292]	[2..288]
DAPA_THEMA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 310... DAPA_THEMA - Dihydrodipicolinate synthase OS=Thermotoga maritima GN=dapA PE=1 SV=1	5.0E-99	[3..292]	[2..294]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFTGAFTAI VTPFRNGRVD EERFRELIEW QIEQGINGLV PCGTTGESAT LSHDEHRDVI  60
   61 RICVEQVKGR IPVLAGAGSN NTREAIDLTR FAKEAGADGA LLITPYYNKP TQEGLYLHFK 120
  121 AIASEVSMPF IVYNVPSRTG TNICPETLAR LNRDIPEVVG VKEATGNLIQ VSEILEYCGT 180
  181 DFQVLSGDDF TVLPLLSVGG CGVISVTSNV VPAKMSDMCR AFKAGDLATA RRLHFELSPI 240
  241 NRAMFLETNP IPVKTALALM GRIDLEMRLP LCPLQQVNQS RLRDILAAAG IL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	2ehhA
Description:	No description for 2ehhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits