YRC Public Data Repository - Protein Structure Prediction

Protein:	AMIF_DESVV
Organism:	Desulfovibrio vulgaris DP4
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMIF_DESVV.

Description	E-value	Query Range	Subject Range
AMIF_HELPH - Formamidase OS=Helicobacter pylori (strain HPAG1) GN=amiF PE=3 SV=1	2.0E-79	[1..333]	[1..333]
AMIF_HELPY - Formamidase OS=Helicobacter pylori GN=amiF PE=1 SV=1 AMIF_HELPY - Formamidase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=amiF PE=1 SV=1	3.0E-79	[1..333]	[1..333]
AMIF_HELPJ - Formamidase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=amiF PE=3 SV=1 gi\|7463827 - gi\|7463827\|pir\|\|C71842 aliphatic amidase - Helicobacter pylori (strain J99)	6.0E-79	[1..333]	[1..333]
AMIF_HELAH - Formamidase OS=Helicobacter acinonychis (strain Sheeba) GN=amiF PE=3 SV=1	6.0E-76	[1..333]	[1..333]
gi\|229192147, gi... - gi\|229192147\|ref\|ZP_04319115.1\| Formamidase [Bacillus cereus ATCC 10876], gi\|228591354\|gb\|EEK49205.1... AMIF_BACCR - Formamidase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NR... gi\|229152137, gi... - gi\|229152137\|ref\|ZP_04280331.1\| Formamidase [Bacillus cereus m1550], gi\|228631329\|gb\|EEK87964.1\| For... AMIF_BACC4 - Formamidase OS=Bacillus cereus (strain B4264) GN=amiF PE=3 SV=1 gi\|229180214, gi... - gi\|229180214\|ref\|ZP_04307558.1\| Formamidase [Bacillus cereus 172560W], gi\|228603423\|gb\|EEK60900.1\| F... gi\|229071438, gi... - gi\|229071438\|ref\|ZP_04204660.1\| Formamidase [Bacillus cereus F65185], gi\|228711729\|gb\|EEL63682.1\| Fo... gi\|229129216, gi... - gi\|229129216\|ref\|ZP_04258189.1\| Formamidase [Bacillus cereus BDRD-Cer4], gi\|228654453\|gb\|EEL10318.1\|... gi\|228805535, gi... - gi\|228954215\|ref\|ZP_04116243.1\| Formamidase [Bacillus thuringiensis serovar kurstaki str. T03a001], ...	1.0E-75	[1..326]	[1..325]
gi\|167531128, gi... - gi\|167633722\|ref\|ZP_02392046.1\| hydrolase, carbon-nitrogen family [Bacillus anthracis str. A0442], g... gi\|165872190, gi... - gi\|165872190\|ref\|ZP_02216829.1\| hydrolase, carbon-nitrogen family [Bacillus anthracis str. A0488], g... gi\|170688754, gi... - gi\|170688754\|ref\|ZP_02879958.1\| hydrolase, carbon-nitrogen family [Bacillus anthracis str. A0465], g... gi\|167511001, gi... - gi\|167640951\|ref\|ZP_02399208.1\| hydrolase, carbon-nitrogen family [Bacillus anthracis str. A0193], g... AMIF_BACAN - Formamidase OS=Bacillus anthracis GN=amiF PE=3 SV=1 gi\|190566074, gi... - gi\|190566074\|ref\|ZP_03018993.1\| hydrolase, carbon-nitrogen family [Bacillus anthracis Tsiankovskii-I... gi\|177654353, gi... - gi\|177654353\|ref\|ZP_02936282.1\| hydrolase, carbon-nitrogen family [Bacillus anthracis str. A0174], g... AMIF_BACHK - Formamidase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=amiF PE=3 SV=1 gi\|196038787, gi... - gi\|196038787\|ref\|ZP_03106095.1\| hydrolase, carbon-nitrogen family [Bacillus cereus NVH0597-99], gi\|1... AMIF_BACCZ - Formamidase OS=Bacillus cereus (strain ZK / E33L) GN=amiF PE=3 SV=1 gi\|196035951, gi... - gi\|196035951\|ref\|ZP_03103353.1\| hydrolase, carbon-nitrogen family [Bacillus cereus W], gi\|195991600\|... gi\|47529447, gi\|... - gi\|47529447\|ref\|YP_020796.1\| formamidase [Bacillus anthracis str. 'Ames Ancestor'], gi\|47504595\|gb\|A... gi\|49186849, gi\|... - gi\|49186849\|ref\|YP_030101.1\| formamidase [Bacillus anthracis str. Sterne], gi\|49180776\|gb\|AAT56152.1... AMIF_BACC0 - Formamidase OS=Bacillus cereus (strain AH820) GN=amiF PE=3 SV=1 gi\|65321334, gi\|... - gi\|65321334\|ref\|ZP_00394293.1\| COG0388: Predicted amidohydrolase [Bacillus anthracis str. A2012], re... gi\|30264010, gi\|... - gi\|30264010\|ref\|NP_846387.1\| formamidase [Bacillus anthracis str. Ames], gi\|30258655\|gb\|AAP27873.1\| ... AMIF_BACHK - Formamidase OS=Bacillus thuringiensis subsp. konkukian GN=amiF PE=3 SV=1 AMIF_BACC3 - Formamidase OS=Bacillus cereus (strain 03BB102) GN=amiF PE=3 SV=1 AMIF_BACAC - Formamidase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=amiF PE=3 SV=1 gi\|228928986, gi... - gi\|228928986\|ref\|ZP_04092018.1\| Formamidase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA... gi\|228947658, gi... - gi\|228947658\|ref\|ZP_04109948.1\| Formamidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1], gi... gi\|228690359, gi... - gi\|229092988\|ref\|ZP_04224119.1\| Formamidase [Bacillus cereus Rock3-42], gi\|228690359\|gb\|EEL44145.1\| ... gi\|229186179, gi... - gi\|229186179\|ref\|ZP_04313348.1\| Formamidase [Bacillus cereus BGSC 6E1], gi\|228597355\|gb\|EEK55006.1\| ... AMIF_BACAA - Formamidase OS=Bacillus anthracis (strain A0248) GN=amiF PE=3 SV=1 gi\|254683706 - gi\|254683706\|ref\|ZP_05147566.1\| formamidase [Bacillus anthracis str. CNEVA-9066] gi\|254736051 - gi\|254736051\|ref\|ZP_05193757.1\| formamidase [Bacillus anthracis str. Western North America USA6153] gi\|254743942 - gi\|254743942\|ref\|ZP_05201625.1\| formamidase [Bacillus anthracis str. Kruger B] gi\|254754279 - gi\|254754279\|ref\|ZP_05206314.1\| formamidase [Bacillus anthracis str. Vollum] gi\|254758030 - gi\|254758030\|ref\|ZP_05210057.1\| formamidase [Bacillus anthracis str. Australia 94]	2.0E-75	[1..326]	[1..325]
gi\|228792694, gi... - gi\|228966960\|ref\|ZP_04127998.1\| Formamidase [Bacillus thuringiensis serovar sotto str. T04001], gi\|2... gi\|74490425, gi\|... - gi\|75762091\|ref\|ZP_00741997.1\| Amidase [Bacillus thuringiensis serovar israelensis ATCC 35646], gi\|7... AMIF_BACC2 - Formamidase OS=Bacillus cereus (strain G9842) GN=amiF PE=3 SV=1 gi\|228857189, gi... - gi\|228902445\|ref\|ZP_04066599.1\| Formamidase [Bacillus thuringiensis IBL 4222], gi\|228857189\|gb\|EEN01...	2.0E-74	[1..326]	[1..325]
AMIF_BRAJA - Formamidase OS=Bradyrhizobium japonicum GN=amiF PE=3 SV=1 AMIF_BRADU - Formamidase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) ...	8.0E-72	[1..333]	[1..330]
gi\|78214114, gi\|... - gi\|78214114\|ref\|YP_382893.1\| formamidase [Synechococcus sp. CC9605], gi\|78198573\|gb\|ABB36338.1\| Form...	2.0E-70	[1..326]	[1..325]
AMIF_PHOLL - Formamidase OS=Photorhabdus luminescens subsp. laumondii GN=amiF PE=3 SV=1 AMIF_PHOLL - Formamidase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) GN=a...	2.0E-70	[1..326]	[1..325]

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Predicted Domain #1

Region A:
Residues: [1-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSIGSMNKP SEGMLMGLVQ YPVPIVNSRR DIEASVDRIC AATAATKAGY PGMDLIVWPE  60
   61 YSTQGLNTKK WVTEEFLMDV EEPLFQRYAQ TCKENDVWGV FSIMERNPNK NQMPYNTAVI 120
  121 FNNKGELALK YRKLNPWVPI EPWMPGDLGQ PVCDGPGGSK LSLCICHDGM FPEQAREAAY 180
  181 KGCNVYIRIS GYSTQVNEQW ILTNRSNAWH NLMYTAAVNL AGYDGVFYYF GEGQVCNFDG 240
  241 TTLVQGHRNP WEIVTAEVFP KMADQARTDW GLENNIFNVG TRGYVAHPGG VKDCPYTWVK 300
  301 DFAAGKYHLP WEDKIKIKDG SIYGYPTTGG RFGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.69897
Match:	2dyuA
Description:	No description for 2dyuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits