YRC Public Data Repository - Protein Structure Prediction

Protein:	NEDD8_RAT
Organism:	Rattus norvegicus
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NEDD8_RAT.

Description	E-value	Query Range	Subject Range
gi\|73970166 - gi\|73970166\|ref\|XP_531829.2\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [C...	149.0	[0..1]	[77..73]
gi\|114577583 - gi\|114577583\|ref\|XP_001147989.1\| PREDICTED: similar to RPS27A protein [Pan troglodytes]	149.0	[0..1]	[77..80]
gi\|5523975 - gi\|5523975\|gb\|AAD44040.1\|AF104023_1 polyprotein [Bovine viral diarrhea virus genotype 2]	148.0	[0..1]	[77..177]
gi\|73586974 - gi\|73586974\|gb\|AAI02492.1\| RPS27A protein [Bos taurus]	148.0	[0..1]	[77..26]
gi\|39725569 - gi\|39725569\|dbj\|BAD04937.1\| poryprotein [Bovine viral diarrhea virus 190cp]	147.0	[0..1]	[77..1946]
gi\|600539 - gi\|600539\|gb\|AAA57047.1\| ubiquitin [synthetic construct]	146.0	[0..1]	[77..1]
gi\|56078799 - gi\|56078799\|gb\|AAH53371.1\| Ribosomal protein S27a [Homo sapiens]	146.0	[0..1]	[77..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIKVKTLTG KEIEIDIEPT DKVERIKERV EEKEGIPPQQ QRLIYSGKQM NDEKTAADYK  60
   61 ILGGSVLHLV LALRGGGGLG Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	2ojrA
Description:	No description for 2ojrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits