YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121631374, gi...
Organism:	Vibrio cholerae V52
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121631374, gi....

Description	E-value	Query Range	Subject Range
tr\|C6YHJ5\|C6YHJ5... - Putative uncharacterized protein OS=Vibrio cholerae MO10 GN=VchoM_01798 PE=4 SV=1 gi\|75830605, gi\|... - gi\|75830605\|ref\|ZP_00759880.1\| COG2026: Cytotoxic translational repressor of toxin-antitoxin stabili... gi\|75814373 - gi\|75814373\|ref\|ZP_00744971.1\| COG2026: Cytotoxic translational repressor of toxin-antitoxin stabili... gi\|75825630 - gi\|75825630\|ref\|ZP_00755066.1\| COG2026: Cytotoxic translational repressor of toxin-antitoxin stabili...	120.0	[0..2]	[96..1]
gi\|46916304, gi\|... - gi\|54302880\|ref\|YP_132873.1\| putative relE protein [Photobacterium profundum SS9], gi\|46916304\|emb\|C...	120.0	[0..2]	[94..1]
gi\|30138916, gi\|... - gi\|30249553\|ref\|NP_841623.1\| hypothetical protein NE1584 [Nitrosomonas europaea ATCC 19718], gi\|3013...	120.0	[0..2]	[95..1]
gi\|23897250, gi\|... - gi\|24211003\|ref\|NP_710173.1\| putative RelE protein [Aeromonas salmonicida subsp. salmonicida], gi\|23...	119.0	[0..2]	[95..25]
gi\|121586507, gi... - gi\|121586507\|ref\|ZP_01676294.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215493... gi\|125619073, gi... - gi\|75830466\|ref\|ZP_00759743.1\| COG2026: Cytotoxic translational repressor of toxin-antitoxin stabili... gi\|121726182, gi... - gi\|121726182\|ref\|ZP_01679480.1\| conserved hypothetical protein [Vibrio cholerae V52], gi\|121631401\|g... gi\|153220937, gi... - gi\|153220937\|ref\|ZP_01952019.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241201... gi\|153803210, gi... - gi\|153803210\|ref\|ZP_01957796.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124121273... gi\|153817340, gi... - gi\|153817340\|ref\|ZP_01970007.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|227011160, gi... - gi\|227812018\|ref\|YP_002812028.1\| relE protein [Vibrio cholerae M66-2], gi\|227011160\|gb\|ACP07371.1\| r... gi\|153820965, gi... - gi\|229509493\|ref\|ZP_04398975.1\| RelE protein [Vibrio cholerae B33], gi\|229353443\|gb\|EEO18381.1\| RelE... gi\|229506373, gi... - gi\|229506373\|ref\|ZP_04395882.1\| stability protein StbE [Vibrio cholerae BX 330286], gi\|229356724\|gb\|... gi\|229513338, gi... - gi\|229513338\|ref\|ZP_04402803.1\| RelE protein [Vibrio cholerae TMA 21], gi\|229349748\|gb\|EEO14703.1\| R... gi\|229346550, gi... - gi\|229516669\|ref\|ZP_04406116.1\| stability protein StbE [Vibrio cholerae RC9], gi\|229346550\|gb\|EEO115... gi\|229339980, gi... - gi\|229523001\|ref\|ZP_04412414.1\| RelE protein [Vibrio cholerae TM 11079-80], gi\|229339980\|gb\|EEO04989... gi\|229605940, gi... - gi\|229605940\|ref\|YP_002876644.1\| RelE protein [Vibrio cholerae MJ-1236], gi\|229372426\|gb\|ACQ62848.1\|... gi\|396846, gi\|74... - gi\|746233\|prf\|\|2017285D ORF 3.2, gi\|396846\|emb\|CAA45444.1\| unnamed protein product [Vibrio cholerae]... gi\|227015065, gi... - gi\|75825641\|ref\|ZP_00755077.1\| COG2026: Cytotoxic translational repressor of toxin-antitoxin stabili... gi\|15601207, gi\|... - gi\|9657847\|gb\|AAF96350.1\| relE protein [Vibrio cholerae O1 biovar eltor str. N16961], gi\|15601207\|re... gi\|75817428 - gi\|75817428\|ref\|ZP_00747847.1\| COG2026: Cytotoxic translational repressor of toxin-antitoxin stabili...	117.0	[0..2]	[95..1]
gi\|91224354, gi\|... - gi\|91224354\|ref\|ZP_01259616.1\| putative relE protein [Vibrio alginolyticus 12G01], gi\|91190696\|gb\|EA...	117.0	[0..2]	[95..1]
gi\|84379062, gi\|... - gi\|84385746\|ref\|ZP_00988776.1\| putative relE protein [Vibrio splendidus 12B01], gi\|84379062\|gb\|EAP95...	116.0	[0..2]	[95..1]
gi\|16764895, gi\|... - gi\|16764895\|ref\|NP_460510.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16420072\|... gi\|197242262, gi... - gi\|197264007\|ref\|ZP_03164081.1\| putative stability protein StbE [Salmonella enterica subsp. enterica... gi\|199602061, gi... - gi\|200389616\|ref\|ZP_03216227.1\| putative stability protein StbE [Salmonella enterica subsp. enterica... gi\|205343662, gi... - gi\|205343662\|gb\|EDZ30426.1\| putative stability protein StbE [Salmonella enterica subsp. enterica ser... gi\|197211528, gi... - gi\|197247825\|ref\|YP_002146491.1\| putative stability protein StbE [Salmonella enterica subsp. enteric... gi\|205351004, gi... - gi\|205351004\|gb\|EDZ37635.1\| putative stability protein StbE [Salmonella enterica subsp. enterica ser... gi\|168463023, gi... - gi\|195634493\|gb\|EDX52845.1\| putative stability protein StbE [Salmonella enterica subsp. enterica ser... gi\|167992897, gi... - gi\|205328958\|gb\|EDZ15722.1\| putative stability protein StbE [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=STM14_1870] [protein=putative cytoplasmic protein] [protein_id=YP_005237438.1] [location=compl...	116.0	[0..2]	[94..1]
gi\|73858520, gi\|... - gi\|74315043\|ref\|YP_313461.1\| hypothetical protein SSON_P208 [Shigella sonnei Ss046], gi\|73858520\|gb\|... gi\|194412337, gi... - gi\|194429613\|ref\|ZP_03062132.1\| toxin RelE [Escherichia coli B171], gi\|194412337\|gb\|EDX28640.1\| toxi... gi\|215276213, gi... - gi\|215276213\|ref\|YP_002332176.1\| hypothetical protein E2348_P1_033 [Escherichia coli O127:H6 str. E2... gi\|116006924, gi... - gi\|6009419\|dbj\|BAA84878.1\| orf43 [Escherichia coli], gi\|190014895\|ref\|YP_001965407.1\| hypothetical p...	115.0	[0..2]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTYKLKFLP AAQKEWSKLA PTIQSQFKKK LKERLENPHV PSAKLRGYDA VYKIKLRTAG  60
   61 YRLAYEVIDD EIVVYVLAVG KRDKDAVYKK LASRFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.522879
Match:	1wmiA
Description:	Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits