YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPR_ECOK1
Organism:	Escherichia coli APEC O1
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPR_ECOK1.

Description	E-value	Query Range	Subject Range
TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii GN=trpR PE=3 SV=1 TRPR_PHOLL - Trp operon repressor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / T...	131.0	[0..1]	[106..1]
gi\|56418808, gi\|... - gi\|56418808\|ref\|YP_146126.1\| hypothetical protein GK0273 [Geobacillus kaustophilus HTA426], gi\|56378...	127.0	[0..11]	[102..3]
gi\|78043299, gi\|... - gi\|78043299\|ref\|YP_359928.1\| hypothetical protein CHY_1082 [Carboxydothermus hydrogenoformans Z-2901...	127.0	[0..13]	[106..7]
gi\|52079146, gi\|... - gi\|52784513\|ref\|YP_090342.1\| YerC [Bacillus licheniformis ATCC 14580], gi\|52347015\|gb\|AAU39649.1\| Ye...	126.0	[0..11]	[104..3]
gi\|25341354 - pir\|\|G83729 hypothetical protein BH0639 [imported] - Bacillus halodurans (strain C-125) gi\|10173253, gi\|... - gi\|15613202\|ref\|NP_241505.1\| hypothetical protein BH0639 [Bacillus halodurans C-125], gi\|10173253\|db...	125.0	[0..11]	[104..3]
gi\|110683853, gi... - gi\|110803352\|ref\|YP_699595.1\| TrpR-like protein YerC/YecD [Clostridium perfringens SM101], gi\|110683...	125.0	[0..12]	[106..6]
gi\|170663373, gi... - gi\|170663373\|gb\|EDT16056.1\| TrpR homolog YerC/YecD [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|110799881, gi... - gi\|110799881\|ref\|YP_697023.1\| TrpR-like protein YerC/YecD [Clostridium perfringens ATCC 13124], gi\|1... gi\|169296687, gi... - gi\|169347004\|ref\|ZP_02865946.1\| TrpR homolog YerC/YecD [Clostridium perfringens C str. JGS1495], gi\|... gi\|182381246, gi... - gi\|182381246\|gb\|EDT78725.1\| TrpR homolog YerC/YecD [Clostridium perfringens NCTC 8239], gi\|168216701... gi\|168213245, gi... - gi\|170715293\|gb\|EDT27475.1\| TrpR homolog YerC/YecD [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|168210362, gi... - gi\|170711531\|gb\|EDT23713.1\| TrpR homolog YerC/YecD [Clostridium perfringens B str. ATCC 3626], gi\|16... gi\|177908972, gi... - gi\|182625816\|ref\|ZP_02953583.1\| TrpR homolog YerC/YecD [Clostridium perfringens D str. JGS1721], gi\|... gi\|18311316, gi\|... - gi\|18311316\|ref\|NP_563250.1\| TrpR-like protein YerC/YecD [Clostridium perfringens str. 13], gi\|18145...	125.0	[0..12]	[106..6]
YERC_BACSU - Uncharacterized protein yerC OS=Bacillus subtilis GN=yerC PE=4 SV=1 YERC_BACSU - Uncharacterized protein YerC OS=Bacillus subtilis (strain 168) GN=yerC PE=4 SV=1 gi\|221322020 - gi\|221322020\|ref\|ZP_03603314.1\| hypothetical protein BsubsS_03714 [Bacillus subtilis subsp. subtilis... gi\|221317741 - gi\|221317741\|ref\|ZP_03599035.1\| hypothetical protein BsubsJ_03628 [Bacillus subtilis subsp. subtilis... gi\|221312817 - gi\|221312817\|ref\|ZP_03594622.1\| hypothetical protein BsubsN3_03674 [Bacillus subtilis subsp. subtili...	125.0	[0..11]	[105..3]
gi\|83590868, gi\|... - gi\|83590868\|ref\|YP_430877.1\| Trp repressor [Moorella thermoacetica ATCC 39073], gi\|83573782\|gb\|ABC20...	124.0	[0..12]	[103..4]
gi\|67849255, gi\|... - gi\|67916798\|ref\|ZP_00510492.1\| Trp repressor [Clostridium thermocellum ATCC 27405], gi\|67849255\|gb\|E...	123.0	[0..12]	[106..3]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQSPYSAA MAEQRHQEWL RFVDLLKNAY QNDLHLPLLN LMLTPDEREA LGTRVRIVEE  60
   61 LLRGEMSQRE LKNELGAGIA TITRGSNSLK AAPVELRQWL EDVLLKSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	3wrpA
Description:	FLEXIBILITY OF THE DNA-BINDING DOMAINS OF TRP REPRESSOR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits