YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121547217, gi...
Organism:	Vibrio cholerae 2740-80
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121547217, gi....

Description	E-value	Query Range	Subject Range
gi\|116218846, gi... - gi\|75818034\|ref\|ZP_00748263.1\| COG2992: Uncharacterized FlgJ-related protein [Vibrio cholerae V51], ...	246.0	[0..2]	[267..1]
gi\|116188743, gi... - gi\|75829847\|ref\|ZP_00759138.1\| COG2992: Uncharacterized FlgJ-related protein [Vibrio cholerae MO10],... gi\|75814120 - gi\|75814120\|ref\|ZP_00744758.1\| COG2992: Uncharacterized FlgJ-related protein [Vibrio cholerae V52] tr\|C6YBY9\|C6YBY9... - Putative uncharacterized protein OS=Vibrio cholerae MO10 GN=VchoM_00696 PE=4 SV=1	245.0	[0..2]	[267..1]
gi\|75826807 - gi\|75826807\|ref\|ZP_00756242.1\| COG2992: Uncharacterized FlgJ-related protein [Vibrio cholerae O395]	244.0	[0..2]	[267..1]
gi\|28806522, gi\|... - gi\|28898305\|ref\|NP_797910.1\| putative Bax protein [Vibrio parahaemolyticus RIMD 2210633], gi\|2880652... gi\|28806522 - gi\|28806522\|dbj\|BAC59794.1\| putative Bax protein [Vibrio parahaemolyticus RIMD 2210633]	224.0	[0..1]	[264..7]
gi\|150419948, gi... - gi\|75822321\|ref\|ZP_00751969.1\| COG2992: Uncharacterized FlgJ-related protein [Vibrio cholerae RC385]...	220.0	[0..2]	[241..1]
gi\|89949649, gi\|... - gi\|90020049\|ref\|YP_525876.1\| bax protein, putative [Saccharophagus degradans 2-40], gi\|89949649\|gb\|A...	214.0	[0..2]	[264..1]
gi\|27365901, gi\|... - gi\|27365901\|ref\|NP_761429.1\| putative Bax protein [Vibrio vulnificus CMCP6], gi\|27362050\|gb\|AAO10956...	211.0	[0..19]	[264..25]
gi\|37198612, gi\|... - gi\|37679867\|ref\|NP_934476.1\| putative Bax protein [Vibrio vulnificus YJ016], gi\|37198612\|dbj\|BAC9444...	210.0	[0..19]	[264..25]
gi\|54309036, gi\|... - gi\|54309036\|ref\|YP_130056.1\| bax protein [Photobacterium profundum SS9], gi\|46913468\|emb\|CAG20254.1\|...	202.0	[0..2]	[264..1]
gi\|24348321, gi\|... - gi\|24373899\|ref\|NP_717942.1\| bax protein, putative [Shewanella oneidensis MR-1], gi\|24348321\|gb\|AAN5... SO2352 - bax protein putative	202.0	[0..11]	[263..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHKRITITL VWLIIVFIAM FGVYRFEKPK KFKLPLLRGE VVGAAPDFSA IHDIAERKEA  60
   61 FFNYLKPGVR YENSRILQER TLLKRIKKDF ADGQLSSHNL AQAQHLATAY S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VALTENNVDN AWLQEMFHRV DVVPEALVLT QAANESAWGT SRFAKEANNY FGQWCYSAGC  60
   61 GLVPLARAEG AFHEVAKFDS VQDSIQSYFM NVNRNPAYRE LREIRFQLRQ QKINPNSDES 120
  121 AKAMSNGLLK YSERGEAYVR DLQAMMLANQ EYWNDN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits