YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194554054, gi...
Organism:	Pseudomonas aeruginosa 2192
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194554054, gi....

Description	E-value	Query Range	Subject Range
gi\|84318062 - gi\|84318062\|ref\|ZP_00966491.1\| COG1607: Acyl-CoA hydrolase [Pseudomonas aeruginosa C3719]	1.0E-39	[29..188]	[1..160]
gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], gi\|67086583\|g... gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], ref\|ZP_000907...	2.0E-39	[29..185]	[1..157]
gi\|23100499, gi\|... - gi\|23100499\|ref\|NP_693966.1\| acyl-CoA thioester hydrolase [Oceanobacillus iheyensis HTE831], gi\|2277...	5.0E-39	[26..187]	[1..162]
gi\|71848752, gi\|... - gi\|71909131\|ref\|YP_286718.1\| thioesterase superfamily protein [Dechloromonas aromatica RCB], gi\|7184...	5.0E-39	[29..184]	[1..156]
gi\|17430671 - gi\|17430671\|emb\|CAD17354.1\| putative acyl-coa hydrolase or thioesterase ; protein [Ralstonia solanac... gi\|17548424 - gi\|17548424\|ref\|NP_521764.1\| acyl-CoA thioester hydrolase-related protein [Ralstonia solanacearum GM...	1.0E-38	[35..185]	[7..157]
gi\|110335861, gi... - gi\|121595165\|ref\|YP_987061.1\| thioesterase superfamily protein [Acidovorax sp. JS42], gi\|120607245\|g... gi\|222111506, gi... - gi\|222111506\|ref\|YP_002553770.1\| thioesterase superfamily protein [Diaphorobacter sp. TPSY], gi\|2217...	2.0E-38	[29..186]	[1..158]
gi\|107104621 - gi\|107104621\|ref\|ZP_01368539.1\| hypothetical protein PaerPA_01005700 [Pseudomonas aeruginosa PACS2] gi\|84324838 - gi\|84324838\|ref\|ZP_00972891.1\| COG1607: Acyl-CoA hydrolase [Pseudomonas aeruginosa 2192] gi\|53726867 - gi\|53726867\|ref\|ZP_00140355.2\| COG1607: Acyl-CoA hydrolase [Pseudomonas aeruginosa UCBPP-PA14]	4.0E-38	[38..188]	[1..151]
gi\|52079800, gi\|... - gi\|52079800\|ref\|YP_078591.1\| putative acyl-CoA thioester hydrolase [Bacillus licheniformis ATCC 1458...	5.0E-38	[25..186]	[3..164]
gi\|94417232 - gi\|94417232\|ref\|ZP_01297051.1\| hypothetical protein PaerP_01001029 [Pseudomonas aeruginosa PA7]	6.0E-38	[38..188]	[1..151]

Back

Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIENLWPLP SSFASMVSPA RPDERKSAMQ PGNNQLSMTV LMTPDMANFS GNVHGGTLLK  60
   61 YLDEVAYACA SRYAGRYVVT LSVDQVIFRE PVHVGELVTF LASVNYTGRT SMEIGVKVIT 120
  121 ENIREQSVRH TNSCFFTMVA LDDERKPVAV RPLELETAEQ KRRFAQAQQR RQLRAELEAR 180
  181 YQAIREDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.522879
Match:	1vpmA
Description:	Crystal structure of Acyl-CoA hydrolase (NP_241664.1) from Bacillus halodurans at 1.66 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits