YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP8_RAT
Organism:	Rattus norvegicus
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP8_RAT.

Description	E-value	Query Range	Subject Range
gi\|78157540, gi\|... - gi\|78157540\|gb\|ABB22884.1\| ATP synthase subunit 8 [Neofelis nebulosa], gi\|115531614\|ref\|YP_784000.1\|...	96.0	[0..1]	[67..1]
gi\|15079208, gi\|... - gi\|15079208\|ref\|NP_149948.1\| ATP synthase F0 subunit 8 [Episoriculus fumidus], gi\|14599782\|gb\|AAK710...	95.0	[0..1]	[67..1]
gi\|16416427, gi\|... - gi\|42632234\|ref\|NP_976117.1\| ATP synthase F0 subunit 8 [Sorex unguiculatus], gi\|16416427\|dbj\|BAB7063...	95.0	[0..1]	[67..1]
gi\|38373503, gi\|... - gi\|38373503\|gb\|AAR19071.1\| ATP synthase subunit 8 [Acinonyx jubatus], gi\|38349480\|ref\|NP_941382.1\| A...	94.0	[0..1]	[67..1]
ATP8_HORSE - ATP synthase protein 8 OS=Equus caballus GN=MT-ATP8 PE=3 SV=1	94.0	[0..1]	[67..1]
gi\|91702680, gi\|... - gi\|91702708\|gb\|ABE48263.1\| ATP synthase F0 subunit 8 [Canis latrans], gi\|91702680\|gb\|ABE48237.1\| ATP...	94.0	[0..1]	[67..1]
gi\|51339337 - gi\|51339337\|gb\|AAU00429.1\| ATP synthase F0 subunit 8 [Puma concolor]	94.0	[0..1]	[67..1]
gi\|189492265, gi... - gi\|91702540\|gb\|ABE48107.1\| ATP synthase F0 subunit 8 [Canis lupus familiaris], gi\|189494155\|gb\|ACE02...	94.0	[0..1]	[67..1]
gi\|51339480 - gi\|51339480\|gb\|AAU00498.1\| ATP synthase F0 subunit 8 [Lontra canadensis]	94.0	[0..1]	[66..1]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLDTSTWF ITIISSMATL FILFQLKISS QTFPAPPSPK TMATEKTNNP WESKWTKIYL  60
   61 PLSLPPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.769551
Match:	PF00895.11
Description:	No description for PF00895.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits