YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126520625, gi...
Organism:	Vibrio cholerae B33
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126520625, gi....

Description	E-value	Query Range	Subject Range
gi\|75831039, gi\|... - gi\|75831039\|ref\|ZP_00760307.1\| COG0668: Small-conductance mechanosensitive channel [Vibrio cholerae ... gi\|75827056 - gi\|75827056\|ref\|ZP_00756491.1\| COG0668: Small-conductance mechanosensitive channel [Vibrio cholerae ...	184.0	[0..32]	[163..1]
tr\|A0A085TBE4\|A0... - Uncharacterized protein OS=Vibrio cholerae GN=DN30_1107 PE=4 SV=1 gi\|75820142, gi\|... - gi\|75820142\|ref\|ZP_00750197.1\| COG0668: Small-conductance mechanosensitive channel [Vibrio cholerae ...	184.0	[0..32]	[163..1]
gi\|116215312, gi... - gi\|75821969\|ref\|ZP_00751698.1\| hypothetical protein VchoR_01002730 [Vibrio cholerae RC385], gi\|11621...	183.0	[0..32]	[163..1]
gi\|91188903, gi\|... - gi\|91226940\|ref\|ZP_01261537.1\| hypothetical protein V12G01_16187 [Vibrio alginolyticus 12G01], gi\|91...	182.0	[0..32]	[162..1]
gi\|28806965 - gi\|28806965\|dbj\|BAC60236.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28806965, gi\|... - gi\|28898747\|ref\|NP_798352.1\| hypothetical protein VP1973 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|153840210, gi... - gi\|153840210\|ref\|ZP_01992877.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	180.0	[0..32]	[162..1]
gi\|75853849, gi\|... - gi\|75853849\|ref\|ZP_00761600.1\| hypothetical protein VEx2w_01003984 [Vibrio sp. Ex25], gi\|116183382\|r...	180.0	[0..32]	[162..1]
gi\|75815030, gi\|... - gi\|75815030\|ref\|ZP_00745561.1\| hypothetical protein VchoV_01002277 [Vibrio cholerae V52], gi\|1217279...	175.0	[0..38]	[163..1]
gi\|37198137, gi\|... - gi\|37679394\|ref\|NP_934003.1\| hypothetical protein VV1210 [Vibrio vulnificus YJ016], gi\|37198137\|dbj\|...	163.0	[0..49]	[161..17]
gi\|27366345, gi\|... - gi\|27366345\|ref\|NP_761873.1\| hypothetical protein VV1_3076 [Vibrio vulnificus CMCP6], gi\|27362546\|gb...	163.0	[0..49]	[161..17]
gi\|17223824 - gi\|17223824\|gb\|AAL10691.1\| hypothetical lipoprotein [Escherichia coli]	156.0	[0..34]	[160..9]

Back

Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHKLGRMPI LMSRRVFMPT SLLNLSKKYS DMKKIVLSSV IASTLLLVGC SSGSAEKQRN  60
   61 LELLAGNRAS LLSTELPLEF GPLNILRATA KGSTVELMMV YNTDANNAKP TEQVLQSAVS 120
  121 SFCANKDIRS NLDVGISYRI QMRNTRGQLM ADQLVTKESC KQG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits