YRC Public Data Repository - Protein Structure Prediction

Protein:	CX6C1_RAT
Organism:	Rattus norvegicus
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX6C1_RAT.

Description	E-value	Query Range	Subject Range
gi\|76636064 - gi\|76636064\|ref\|XP_615264.2\| PREDICTED: similar to Cytochrome c oxidase polypeptide VIc-2 [Bos tauru...	130.0	[0..4]	[75..2]
gi\|94393998, gi\|... - gi\|94393998\|ref\|XP_988746.1\| PREDICTED: similar to cytochrome c oxidase, subunit VIc [Mus musculus],...	128.0	[0..1]	[76..1]
gi\|109772 - pir\|\|S16083 cytochrome-c oxidase (EC 1.9.3.1) chain VIc - mouse CX6C2_RAT - Cytochrome c oxidase subunit 6C-2 OS=Rattus norvegicus GN=Cox6c2 PE=1 SV=3 COX6C_VICPA - Cytochrome c oxidase subunit 6C OS=Vicugna pacos GN=COX6C PE=3 SV=1	127.0	[0..1]	[76..1]
gi\|58332062, gi\|... - gi\|58332062\|ref\|NP_001011180.1\| cytochrome c oxidase subunit VIc [Xenopus (Silurana) tropicalis], gi...	118.0	[0..3]	[76..2]
gi\|148226741, gi... - gi\|49118915\|gb\|AAH73010.1\| MGC82595 protein [Xenopus laevis], gi\|148226741\|ref\|NP_001085605.1\| MGC82...	117.0	[0..4]	[76..3]
ENSMMUG000000001... - null, null COX6C_MACSL - Cytochrome c oxidase subunit 6C OS=Macaca silenus GN=COX6C PE=3 SV=1	117.0	[0..3]	[76..2]
COX6C_TARSY - Cytochrome c oxidase subunit 6C OS=Tarsius syrichta GN=COX6C PE=3 SV=1	117.0	[0..3]	[76..2]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGALLPKP QMHDPLSKRL WVHIVGAFIV DLGVAAAHKF GAAKPRKKAY ADFYRNHDPM  60
   61 KDFDEMRKAG VFRSVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	1occI
Description:	Mitochondrial cytochrome c oxidase subunit VIc
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits