YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125619346, gi...
Organism:	Vibrio cholerae MO10
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125619346, gi....

Description	E-value	Query Range	Subject Range
gi\|59480588, gi\|... - gi\|59712487\|ref\|YP_205263.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio fischeri ...	253.0	[0..20]	[255..18]
gi\|37197883, gi\|... - gi\|37679141\|ref\|NP_933750.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio vulnificu...	247.0	[0..15]	[255..8]
gi\|27359827, gi\|... - gi\|27363711\|ref\|NP_759239.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio vulnificu...	247.0	[0..15]	[255..8]
gi\|91189517, gi\|... - gi\|91225867\|ref\|ZP_01260836.1\| flagellar basal body P-ring biosynthesis protein A [Vibrio alginolyti...	246.0	[0..19]	[255..12]
gi\|28805758, gi\|... - gi\|5361002\|gb\|AAD42909.1\|U12817_3 polar flagellar FlgA homolog [Vibrio parahaemolyticus], gi\|2880575... gi\|28805758, gi\|... - gi\|28897546\|ref\|NP_797151.1\| flagellar basal body P-ring biosynthesis protein FlgA [Vibrio parahaemo...	245.0	[0..22]	[255..15]
gi\|54308091, gi\|... - gi\|54308091\|ref\|YP_129111.1\| flagellar basal body P-ring biosynthesis protein FlgA [Photobacterium p...	235.0	[0..24]	[255..4]
gi\|90328212, gi\|... - gi\|90410999\|ref\|ZP_01219013.1\| flagellar basal body P-ring biosynthesis protein [Photobacterium prof...	227.0	[0..24]	[255..4]
gi\|23092309 - gi\|23092309\|gb\|AAN08634.1\| FlgA [Aeromonas hydrophila]	224.0	[0..29]	[255..112]
gi\|75855308, gi\|... - gi\|75855308\|ref\|ZP_00762963.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Vibrio sp....	224.0	[0..40]	[255..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPEKRKMH PKIDLHSHFI TKCRAFCEIF YSFIGFLLFF FSLAANAATP EQLSMIKEAA  60
   61 ENHVLSTVDM PAGGELVVNA ANIDDRLFAT DCPEPLTTNS SSSNGSAANI TVLVECK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNWRVYVPV RLTITIPLIT AATPLSRGQM ISAQDVTLSM VDLLRFRRQG FSTPENVIGA  60
   61 KIKKNIRVGD VIEQNDVCIV CRNESVVIRA GKSGMSITTK GTAMSDGVVG EQIKVKNDKS 120
  121 NRIIDAQVSG VGEVTVAF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.75
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits