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View Structure Prediction Details

Protein: gi|126170837, gi...
Organism: Pseudomonas aeruginosa C3719
Length: 197 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126170837, gi....

Description E-value Query
Range
Subject
Range
gi|28805424, gi|... - gi|28897215|ref|NP_796820.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio parahaemo...
gi|28805424 - gi|28805424|dbj|BAC58704.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio parahaemol...
7.0E-56 [1..197] [1..196]
gi|27364058, gi|... - gi|27364058|ref|NP_759586.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio vulnificu...
gi|37678780, gi|... - gi|37678780|ref|NP_933389.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio vulnificu...
8.0E-56 [1..197] [1..196]
gi|91228495, gi|... - gi|91228495|ref|ZP_01262417.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio alginol...
1.0E-55 [1..197] [1..196]
gi|87120441, gi|... - gi|87120441|ref|ZP_01076335.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Marinomonas s...
1.0E-55 [1..197] [1..197]
gi|59719232, gi|... - gi|59802337|ref|YP_209049.1| PetA [Neisseria gonorrhoeae FA 1090], gi|59719232|gb|AAW90637.1| putati...
2.0E-55 [1..193] [1..193]
gi|161594692, gi... - gi|161869139|ref|YP_001598305.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria men...
gi|240015608 - gi|240015608|ref|ZP_04722148.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|240081784 - gi|240081784|ref|ZP_04726327.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|11354223 - pir||F81011 ubiquinol-cytochrome c reductase, iron-sulfur chain NMB2053 [imported] - Neisseria menin...
gi|239999887 - gi|239999887|ref|ZP_04719811.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|121051383, gi... - gi|7379136|emb|CAB83684.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningiti...
gi|240013166 - gi|240013166|ref|ZP_04720079.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|15677875, gi|... - gi|7227315|gb|AAF42373.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Neisseria meningit...
gi|240116900 - gi|240116900|ref|ZP_04730962.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|240120237 - gi|240120237|ref|ZP_04733199.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|240114064 - gi|240114064|ref|ZP_04728554.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|240114698 - gi|240114698|ref|ZP_04728760.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|240127244 - gi|240127244|ref|ZP_04739905.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|254492755, gi... - gi|254492755|ref|ZP_05105926.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|240122535 - gi|240122535|ref|ZP_04735491.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|240126617 - gi|240126617|ref|ZP_04739503.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono...
gi|254673758 - gi|254673758|emb|CBA09435.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningi...
gi|254804137, gi... - gi|254804137|ref|YP_003082358.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria men...
gi|254671212 - gi|254671212|emb|CBA08398.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningi...
gi|193934987, gi... - gi|194099697|ref|YP_002002832.1| Ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gon...
gi|121635711, gi... - gi|121635711|ref|YP_975956.1| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria mening...
2.0E-55 [1..193] [1..193]
gi|77460913, gi|... - gi|77460913|ref|YP_350420.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas fluo...
4.0E-54 [1..197] [1..197]
gi|70732403, gi|... - gi|70732403|ref|YP_262159.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas fluo...
2.0E-53 [1..197] [1..197]
gi|26988052, gi|... - gi|26988052|ref|NP_743477.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas puti...
gi|166862011, gi... - gi|167035523|ref|YP_001670754.1| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas ...
gi|148549611, gi... - gi|82738675|ref|ZP_00901502.1| Ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas pu...
tr|E4RIE0|E4RIE0... - Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Pseudomonas putida (strain BIRD-1) GN=petA P...
3.0E-53 [1..197] [1..197]
gi|125617267, gi... - gi|75828557|ref|ZP_00757940.1| COG0723: Rieske Fe-S protein [Vibrio cholerae MO10], gi|254850809|ref...
gi|147673531, gi... - gi|75825940|ref|ZP_00755375.1| COG0723: Rieske Fe-S protein [Vibrio cholerae O395], gi|227116949|ref...
gi|225354481, gi... - gi|75817695|ref|ZP_00748009.1| COG0723: Rieske Fe-S protein [Vibrio cholerae V51], gi|254226870|ref|...
gi|229368795, gi... - gi|229606140|ref|YP_002876788.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio choler...
gi|121730048, gi... - gi|75814447|ref|ZP_00745034.1| COG0723: Rieske Fe-S protein [Vibrio cholerae V52], gi|121730048|ref|...
gi|229332157, gi... - gi|229530384|ref|ZP_04419772.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera...
gi|229338812, gi... - gi|229525231|ref|ZP_04414636.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera...
gi|229520867, gi... - gi|229520867|ref|ZP_04410289.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera...
gi|153216743, gi... - gi|153216743|ref|ZP_01950583.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole...
gi|229344312, gi... - gi|229519623|ref|ZP_04409066.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera...
gi|124117821, gi... - gi|153224123|ref|ZP_01954228.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole...
gi|229512840, gi... - gi|229512840|ref|ZP_04402307.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera...
gi|126509024, gi... - gi|153820430|ref|ZP_01973097.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole...
gi|229353739, gi... - gi|229509167|ref|ZP_04398652.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera...
gi|229507182, gi... - gi|229507182|ref|ZP_04396688.1| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera...
gi|227080756, gi... - gi|227080756|ref|YP_002809307.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chol...
gi|153830225, gi... - gi|153830225|ref|ZP_01982892.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole...
gi|197751425, gi... - gi|254291286|ref|ZP_04962081.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole...
gi|149738698, gi... - gi|153827395|ref|ZP_01980062.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole...
gi|9655004, gi|1... - gi|9655004|gb|AAF93741.1| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio cholerae O1...
gi|11356304 - pir||B82305 ubiquinol-cytochrome c reductase, iron-sulfur chain VC0573 [imported] - Vibrio cholerae ...
7.0E-53 [1..194] [1..193]

Back

Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDGVNAGR RRFLVAATSV VGAAGAVGAA VPFVGSWFPS AKAKAAGAPV QVNVGKIDPG  60
   61 QQIIAEWRGK PVFIVHRTKE MLDALPSLEG QLADPDSKAS EQPEYVDPKL RSIKPELAVI 120
  121 VGICTHLGCS PTFRPEVAPA DLGPDWKGGY FCPCHGSHYD LAGRVYKGQP APLNLPIPPY 180
  181 TFDADDVITI GVDQEKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.0
Match: 1bccE
Description: ISP subunit of the mitochondrial cytochrome bc1-complex, watersoluble domain; Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ubiquinol-cytochrome-c reductase activity 9.65724929491711 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 9.65724929491711 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 9.125468664417 bayes_pls_golite062009
oxidoreductase activity 6.05060612159037 bayes_pls_golite062009
electron carrier activity 5.20213585732279 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 4.21571853217094 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 4.06768260706614 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.42417427779305 bayes_pls_golite062009
cation transmembrane transporter activity 3.16998920469705 bayes_pls_golite062009
ion transmembrane transporter activity 2.96169692239126 bayes_pls_golite062009
catalytic activity 0.746741393172769 bayes_pls_golite062009
iron-sulfur cluster binding 0.71220774812099 bayes_pls_golite062009
metal cluster binding 0.71220774812099 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.0925221440840771 bayes_pls_golite062009
substrate-specific transporter activity 0.00797690232905524 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle