YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116052464, gi...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116052464, gi....

Description	E-value	Query Range	Subject Range
gi\|28805424, gi\|... - gi\|28897215\|ref\|NP_796820.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio parahaemo... gi\|28805424 - gi\|28805424\|dbj\|BAC58704.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio parahaemol...	7.0E-56	[1..197]	[1..196]
gi\|27364058, gi\|... - gi\|27364058\|ref\|NP_759586.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio vulnificu... gi\|37678780, gi\|... - gi\|37678780\|ref\|NP_933389.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio vulnificu...	8.0E-56	[1..197]	[1..196]
gi\|91228495, gi\|... - gi\|91228495\|ref\|ZP_01262417.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio alginol...	1.0E-55	[1..197]	[1..196]
gi\|87120441, gi\|... - gi\|87120441\|ref\|ZP_01076335.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Marinomonas s...	1.0E-55	[1..197]	[1..197]
gi\|59719232, gi\|... - gi\|59802337\|ref\|YP_209049.1\| PetA [Neisseria gonorrhoeae FA 1090], gi\|59719232\|gb\|AAW90637.1\| putati...	2.0E-55	[1..193]	[1..193]
gi\|161594692, gi... - gi\|161869139\|ref\|YP_001598305.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria men... gi\|240015608 - gi\|240015608\|ref\|ZP_04722148.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240081784 - gi\|240081784\|ref\|ZP_04726327.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|11354223 - pir\|\|F81011 ubiquinol-cytochrome c reductase, iron-sulfur chain NMB2053 [imported] - Neisseria menin... gi\|239999887 - gi\|239999887\|ref\|ZP_04719811.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|121051383, gi... - gi\|7379136\|emb\|CAB83684.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningiti... gi\|240013166 - gi\|240013166\|ref\|ZP_04720079.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|15677875, gi\|... - gi\|7227315\|gb\|AAF42373.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Neisseria meningit... gi\|240116900 - gi\|240116900\|ref\|ZP_04730962.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240120237 - gi\|240120237\|ref\|ZP_04733199.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240114064 - gi\|240114064\|ref\|ZP_04728554.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240114698 - gi\|240114698\|ref\|ZP_04728760.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240127244 - gi\|240127244\|ref\|ZP_04739905.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|254492755, gi... - gi\|254492755\|ref\|ZP_05105926.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240122535 - gi\|240122535\|ref\|ZP_04735491.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240126617 - gi\|240126617\|ref\|ZP_04739503.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|254673758 - gi\|254673758\|emb\|CBA09435.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningi... gi\|254804137, gi... - gi\|254804137\|ref\|YP_003082358.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria men... gi\|254671212 - gi\|254671212\|emb\|CBA08398.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningi... gi\|193934987, gi... - gi\|194099697\|ref\|YP_002002832.1\| Ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gon... gi\|121635711, gi... - gi\|121635711\|ref\|YP_975956.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria mening...	2.0E-55	[1..193]	[1..193]
gi\|77460913, gi\|... - gi\|77460913\|ref\|YP_350420.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas fluo...	4.0E-54	[1..197]	[1..197]
gi\|70732403, gi\|... - gi\|70732403\|ref\|YP_262159.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas fluo...	2.0E-53	[1..197]	[1..197]
gi\|26988052, gi\|... - gi\|26988052\|ref\|NP_743477.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas puti... gi\|166862011, gi... - gi\|167035523\|ref\|YP_001670754.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas ... gi\|148549611, gi... - gi\|82738675\|ref\|ZP_00901502.1\| Ubiquinol-cytochrome c reductase, iron-sulfur subunit [Pseudomonas pu... tr\|E4RIE0\|E4RIE0... - Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Pseudomonas putida (strain BIRD-1) GN=petA P...	3.0E-53	[1..197]	[1..197]
gi\|125617267, gi... - gi\|75828557\|ref\|ZP_00757940.1\| COG0723: Rieske Fe-S protein [Vibrio cholerae MO10], gi\|254850809\|ref... gi\|147673531, gi... - gi\|75825940\|ref\|ZP_00755375.1\| COG0723: Rieske Fe-S protein [Vibrio cholerae O395], gi\|227116949\|ref... gi\|225354481, gi... - gi\|75817695\|ref\|ZP_00748009.1\| COG0723: Rieske Fe-S protein [Vibrio cholerae V51], gi\|254226870\|ref\|... gi\|229368795, gi... - gi\|229606140\|ref\|YP_002876788.1\| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio choler... gi\|121730048, gi... - gi\|75814447\|ref\|ZP_00745034.1\| COG0723: Rieske Fe-S protein [Vibrio cholerae V52], gi\|121730048\|ref\|... gi\|229332157, gi... - gi\|229530384\|ref\|ZP_04419772.1\| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera... gi\|229338812, gi... - gi\|229525231\|ref\|ZP_04414636.1\| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera... gi\|229520867, gi... - gi\|229520867\|ref\|ZP_04410289.1\| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera... gi\|153216743, gi... - gi\|153216743\|ref\|ZP_01950583.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole... gi\|229344312, gi... - gi\|229519623\|ref\|ZP_04409066.1\| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera... gi\|124117821, gi... - gi\|153224123\|ref\|ZP_01954228.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole... gi\|229512840, gi... - gi\|229512840\|ref\|ZP_04402307.1\| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera... gi\|126509024, gi... - gi\|153820430\|ref\|ZP_01973097.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole... gi\|229353739, gi... - gi\|229509167\|ref\|ZP_04398652.1\| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera... gi\|229507182, gi... - gi\|229507182\|ref\|ZP_04396688.1\| ubiquinol-cytochrome C reductase iron-sulfur subunit [Vibrio cholera... gi\|227080756, gi... - gi\|227080756\|ref\|YP_002809307.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chol... gi\|153830225, gi... - gi\|153830225\|ref\|ZP_01982892.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole... gi\|197751425, gi... - gi\|254291286\|ref\|ZP_04962081.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole... gi\|149738698, gi... - gi\|153827395\|ref\|ZP_01980062.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio chole... gi\|9655004, gi\|1... - gi\|9655004\|gb\|AAF93741.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Vibrio cholerae O1... gi\|11356304 - pir\|\|B82305 ubiquinol-cytochrome c reductase, iron-sulfur chain VC0573 [imported] - Vibrio cholerae ...	7.0E-53	[1..194]	[1..193]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDGVNAGR RRFLVAATSV VGAAGAVGAA VPFVGSWFPS AKAKAAGAPV QVNVGKIDPG  60
   61 QQIIAEWRGK PVFIVHRTKE MLDALPSLEG QLADPDSKAS EQPEYVDPKL RSIKPELAVI 120
  121 VGICTHLGCS PTFRPEVAPA DLGPDWKGGY FCPCHGSHYD LAGRVYKGQP APLNLPIPPY 180
  181 TFDADDVITI GVDQEKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1bccE
Description:	ISP subunit of the mitochondrial cytochrome bc1-complex, watersoluble domain; Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	9.65724929491711	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	9.65724929491711	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	9.125468664417	bayes_pls_golite062009
oxidoreductase activity	6.05060612159037	bayes_pls_golite062009
electron carrier activity	5.20213585732279	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.21571853217094	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	4.06768260706614	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.42417427779305	bayes_pls_golite062009
cation transmembrane transporter activity	3.16998920469705	bayes_pls_golite062009
ion transmembrane transporter activity	2.96169692239126	bayes_pls_golite062009
catalytic activity	0.746741393172769	bayes_pls_golite062009
iron-sulfur cluster binding	0.71220774812099	bayes_pls_golite062009
metal cluster binding	0.71220774812099	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.0925221440840771	bayes_pls_golite062009
substrate-specific transporter activity	0.00797690232905524	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: