YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|119885648, gi...
Organism:	Thermotoga petrophila RKU-1
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119885648, gi....

Description	E-value	Query Range	Subject Range
gi\|228748064, gi... - gi\|229013297\|ref\|ZP_04170438.1\| Purine nucleoside phosphorylase [Bacillus mycoides DSM 2048], gi\|228... gi\|228648571, gi... - gi\|229134896\|ref\|ZP_04263703.1\| Purine nucleoside phosphorylase [Bacillus cereus BDRD-ST196], gi\|228... gi\|229061760, gi... - gi\|229061760\|ref\|ZP_04199093.1\| Purine nucleoside phosphorylase [Bacillus cereus AH603], gi\|22871750... gi\|163864026, gi... - gi\|89207378\|ref\|ZP_01185921.1\| Inosine guanosine and xanthosine phosphorylase:Purine nucleoside phos... gi\|228614679, gi... - gi\|229168831\|ref\|ZP_04296550.1\| Purine nucleoside phosphorylase [Bacillus cereus AH621], gi\|22861467...	289.0	[0..27]	[299..2]
gi\|49480323, gi\|... - gi\|49480323\|ref\|YP_038146.1\| purine nucleoside phosphorylase [Bacillus thuringiensis serovar konkuki...	287.0	[0..27]	[299..2]
gi\|49186994, gi\|... - gi\|49186994\|ref\|YP_030246.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Sterne], gi\|49... gi\|52141407, gi\|... - gi\|52141407\|ref\|YP_085423.1\| purine nucleoside phosphorylase [Bacillus cereus E33L], gi\|51974876\|gb\|... gi\|42739129, gi\|... - gi\|42783201\|ref\|NP_980448.1\| purine nucleoside phosphorylase [Bacillus cereus ATCC 10987], gi\|427391... gi\|47529604, gi\|... - gi\|47529604\|ref\|YP_020953.1\| purine nucleoside phosphorylase [Bacillus anthracis str. 'Ames Ancestor... gi\|65321480, gi\|... - gi\|65321480\|ref\|ZP_00394439.1\| COG0005: Purine nucleoside phosphorylase [Bacillus anthracis str. A20... gi\|30258809, gi\|... - gi\|30264164\|ref\|NP_846541.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Ames], gi\|3025... gi\|47568144, gi\|... - gi\|47568144\|ref\|ZP_00238848.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Ba... gi\|228967121, gi... - gi\|228967121\|ref\|ZP_04128157.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar sott... gi\|228772508, gi... - gi\|228987279\|ref\|ZP_04147400.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar toch... gi\|228723572, gi... - gi\|229047780\|ref\|ZP_04193360.1\| Purine nucleoside phosphorylase [Bacillus cereus AH676], gi\|22872357... gi\|228711527, gi... - gi\|229071591\|ref\|ZP_04204809.1\| Purine nucleoside phosphorylase [Bacillus cereus F65185], gi\|2287115... gi\|164713069, gi... - gi\|165871150\|ref\|ZP_02215800.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0488], gi\|... gi\|229081344, gi... - gi\|229081344\|ref\|ZP_04213847.1\| Purine nucleoside phosphorylase [Bacillus cereus Rock4-2], gi\|228701... gi\|229093148, gi... - gi\|229093148\|ref\|ZP_04224266.1\| Purine nucleoside phosphorylase [Bacillus cereus Rock3-42], gi\|22869... gi\|167512504, gi... - gi\|167639445\|ref\|ZP_02397716.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0193], gi\|... gi\|229111561, gi... - gi\|229111561\|ref\|ZP_04241112.1\| Purine nucleoside phosphorylase [Bacillus cereus Rock1-15], gi\|22867... gi\|167633565, gi... - gi\|167633565\|ref\|ZP_02391889.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0442], gi\|... gi\|228659744, gi... - gi\|229123609\|ref\|ZP_04252804.1\| Purine nucleoside phosphorylase [Bacillus cereus 95/8201], gi\|228659... gi\|229129367, gi... - gi\|229129367\|ref\|ZP_04258338.1\| Purine nucleoside phosphorylase [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|228642612, gi... - gi\|229140822\|ref\|ZP_04269367.1\| Purine nucleoside phosphorylase [Bacillus cereus BDRD-ST26], gi\|2286... gi\|75763025, gi\|... - gi\|75763025\|ref\|ZP_00742816.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar israe... gi\|228636832, gi... - gi\|229146662\|ref\|ZP_04275029.1\| Purine nucleoside phosphorylase [Bacillus cereus BDRD-ST24], gi\|2286... gi\|229152289, gi... - gi\|229152289\|ref\|ZP_04280482.1\| Purine nucleoside phosphorylase [Bacillus cereus m1550], gi\|22863125... gi\|229157671, gi... - gi\|229157671\|ref\|ZP_04285746.1\| Purine nucleoside phosphorylase [Bacillus cereus ATCC 4342], gi\|2286... gi\|229180367, gi... - gi\|229180367\|ref\|ZP_04307710.1\| Purine nucleoside phosphorylase [Bacillus cereus 172560W], gi\|228603... gi\|229186332, gi... - gi\|229186332\|ref\|ZP_04313497.1\| Purine nucleoside phosphorylase [Bacillus cereus BGSC 6E1], gi\|22859... gi\|229198210, gi... - gi\|229198210\|ref\|ZP_04324918.1\| Purine nucleoside phosphorylase [Bacillus cereus m1293], gi\|22858522... gi\|217961580, gi... - gi\|217961580\|ref\|YP_002340150.1\| purine nucleoside phosphorylase [Bacillus cereus AH187], gi\|2170672... gi\|229265706, gi... - gi\|229601298\|ref\|YP_002868387.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0248], gi... gi\|206976231, gi... - gi\|206976231\|ref\|ZP_03237139.1\| purine nucleoside phosphorylase [Bacillus cereus H3081.97], gi\|20674... gi\|254683855 - gi\|254683855\|ref\|ZP_05147715.1\| purine nucleoside phosphorylase [Bacillus anthracis str. CNEVA-9066] gi\|218542258, gi... - gi\|218899249\|ref\|YP_002447660.1\| purine nucleoside phosphorylase [Bacillus cereus G9842], gi\|2185422... gi\|254721690 - gi\|254721690\|ref\|ZP_05183479.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A1055] gi\|218163409, gi... - gi\|218235452\|ref\|YP_002368891.1\| purine nucleoside phosphorylase [Bacillus cereus B4264], gi\|2181634... gi\|254736202 - gi\|254736202\|ref\|ZP_05193908.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Western Nor... gi\|221241595, gi... - gi\|222097537\|ref\|YP_002531594.1\| purine-nucleoside phosphorylase [Bacillus cereus Q1], gi\|221241595\|... gi\|254744091 - gi\|254744091\|ref\|ZP_05201774.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Kruger B] gi\|218536132, gi... - gi\|218905226\|ref\|YP_002453060.1\| purine nucleoside phosphorylase [Bacillus cereus AH820], gi\|2185361... gi\|254754129 - gi\|254754129\|ref\|ZP_05206164.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Vollum] gi\|254758181 - gi\|254758181\|ref\|ZP_05210208.1\| purine nucleoside phosphorylase [Bacillus anthracis str. Australia 9... gi\|170129394, gi... - gi\|170705854\|ref\|ZP_02896317.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0389], gi\|... gi\|170668893, gi... - gi\|170687276\|ref\|ZP_02878494.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0465], gi\|... gi\|190565867, gi... - gi\|190565867\|ref\|ZP_03018786.1\| purine nucleoside phosphorylase [Bacillus anthracis Tsiankovskii-I],... gi\|177652581, gi... - gi\|177652581\|ref\|ZP_02934997.1\| purine nucleoside phosphorylase [Bacillus anthracis str. A0174], gi\|... gi\|196038633, gi... - gi\|196038633\|ref\|ZP_03105941.1\| purine nucleoside phosphorylase [Bacillus cereus NVH0597-99], gi\|196... gi\|196034807, gi... - gi\|196034807\|ref\|ZP_03102214.1\| purine nucleoside phosphorylase [Bacillus cereus W], gi\|195992346\|gb... gi\|206971082, gi... - gi\|206971082\|ref\|ZP_03232033.1\| purine nucleoside phosphorylase [Bacillus cereus AH1134], gi\|2067338... gi\|196021929, gi... - gi\|196047180\|ref\|ZP_03114396.1\| purine nucleoside phosphorylase [Bacillus cereus 03BB108], gi\|196021... gi\|118418514, gi... - gi\|118479289\|ref\|YP_896440.1\| purine nucleoside phosphorylase [Bacillus thuringiensis str. Al Hakam]... gi\|225866072, gi... - gi\|225866072\|ref\|YP_002751450.1\| purine nucleoside phosphorylase [Bacillus cereus 03BB102], gi\|22578... gi\|227816865, gi... - gi\|227816865\|ref\|YP_002816874.1\| purine nucleoside phosphorylase [Bacillus anthracis str. CDC 684], ... gi\|228902597, gi... - gi\|228902597\|ref\|ZP_04066748.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis IBL 4222], g... gi\|228849752, gi... - gi\|228909917\|ref\|ZP_04073738.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis IBL 200], gi... gi\|228842913, gi... - gi\|228916726\|ref\|ZP_04080291.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar puls... gi\|228836893, gi... - gi\|228922838\|ref\|ZP_04086136.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar huaz... gi\|228830426, gi... - gi\|228929136\|ref\|ZP_04092163.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar pond... gi\|228935408, gi... - gi\|228935408\|ref\|ZP_04098226.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar anda... gi\|228954371, gi... - gi\|228954371\|ref\|ZP_04116397.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar kurs... gi\|228960352, gi... - gi\|228960352\|ref\|ZP_04122005.1\| Purine nucleoside phosphorylase [Bacillus thuringiensis serovar paki...	286.0	[0..27]	[299..2]
gi\|89099050, gi\|... - gi\|89099050\|ref\|ZP_01171929.1\| purine nucleoside phosphorylase [Bacillus sp. NRRL B-14911], gi\|89086...	286.0	[0..27]	[298..2]
gi\|152976496, gi... - gi\|89203719\|ref\|ZP_01182322.1\| Inosine guanosine and xanthosine phosphorylase:Purine nucleoside phos...	284.0	[0..27]	[299..2]
PUNA_GEOSE - Purine nucleoside phosphorylase 1 OS=Geobacillus stearothermophilus GN=punA PE=1 SV=1	282.0	[0..27]	[299..2]
gi\|56380690, gi\|... - gi\|56420848\|ref\|YP_148166.1\| purine nucleoside phosphorylase [Geobacillus kaustophilus HTA426], gi\|5...	281.0	[0..27]	[299..2]
gi\|170662732, gi... - gi\|170662732\|gb\|EDT15415.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Clost... gi\|168209733, gi... - gi\|170712135\|gb\|EDT24317.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Clost... gi\|170715058, gi... - gi\|170715058\|gb\|EDT27240.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Clost... gi\|182380302, gi... - gi\|182380302\|gb\|EDT77781.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [Clost... gi\|182624333, gi... - gi\|182624333\|ref\|ZP_02952118.1\| purine nucleoside phosphorylase I, inosine and guanosine-specific [C... gi\|110799224, gi... - gi\|110799224\|ref\|YP_697182.1\| purine nucleoside phosphorylase [Clostridium perfringens ATCC 13124], ...	280.0	[0..26]	[299..2]
gi\|18311477, gi\|... - gi\|18311477\|ref\|NP_563411.1\| purine nucleoside phosphorylase [Clostridium perfringens str. 13], gi\|1...	279.0	[0..26]	[299..2]
gi\|153175180, gi... - gi\|254827162\|ref\|ZP_05231849.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL N3-165],... gi\|153180002, gi... - gi\|254936838\|ref\|ZP_05268535.1\| purine nucleoside phosphorylase [Listeria monocytogenes F6900], gi\|1... gi\|16803992 - gi\|16803992\|ref\|NP_465477.1\| purine nucleoside phosphorylase [Listeria monocytogenes EGD-e] gi\|224498597 - gi\|224498597\|ref\|ZP_03666946.1\| purine nucleoside phosphorylase [Listeria monocytogenes Finland 1988... gi\|25286838, gi\|... - pir\|\|AI1318 purine-nucleoside phosphorylase homolog pnp [imported] - Listeria monocytogenes (strain ... gi\|224501247 - gi\|224501247\|ref\|ZP_03669554.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL R2-561] gi\|47014541, gi\|... - gi\|47097096\|ref\|ZP_00234666.1\| purine nucleoside phosphorylase [Listeria monocytogenes str. 1/2a F68... gi\|255026089 - gi\|255026089\|ref\|ZP_05298075.1\| purine nucleoside phosphorylase [Listeria monocytogenes FSL J2-003] gi\|126943729, gi... - gi\|254899350\|ref\|ZP_05259274.1\| purine nucleoside phosphorylase [Listeria monocytogenes J0161], gi\|1... gi\|254831446, gi... - gi\|254831446\|ref\|ZP_05236101.1\| purine nucleoside phosphorylase [Listeria monocytogenes 10403S], gi\|... gi\|153191449, gi... - gi\|254912511\|ref\|ZP_05262523.1\| purine nucleoside phosphorylase [Listeria monocytogenes J2818], gi\|1...	278.0	[0..28]	[299..3]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSMWCIHDR IFLKKTREVF DVDIKAYKER VEKAVEYLKG QIDETPEIAI ILGSGLSVIA  60
   61 DEVEKEGTSK KIPYSEIPGF PISTAPGHKG ELIFGKLFGK NVMLMNGRFH YYEGYSMKEV 120
  121 TFPIRVMQLL GVEILIVTNA AGGLNPDFEV GRPMIITDHI NFMGDNPLIG PNVDEWGPRF 180
  181 PDMSEPYDKE LIELAYNSAR ELGIPVYQGV YVAVTGPCFE TPAELRMLRK FGADAVGMST 240
  241 VPEVIVARHG QIRVLGISAI TDRAVPEDLK PLTAEEVLEV AEKTGRKIAQ IIFEVVRKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.30103
Match:	1fxuA
Description:	Purine nucleoside phosphorylase, PNP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
S-methyl-5-thioadenosine phosphorylase activity	3.89303327575747	bayes_pls_golite062009
purine-nucleoside phosphorylase activity	3.68206997938506	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds	2.28129906270728	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
binding	1.58090357201399	bayes_pls_golite062009
nicotinamide riboside hydrolase activity	1.38986205931368	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.38135070025071	bayes_pls_golite062009
protein binding	1.28444435808613	bayes_pls_golite062009
nucleoside binding	1.11256863177576	bayes_pls_golite062009
purine binding	1.00226077276304	bayes_pls_golite062009
nucleobase binding	0.914372836742171	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: