YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5924402
Organism:	Plasmodium falciparum
Length:	820 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5924402.

Description	E-value	Query Range	Subject Range
gi\|75701558, gi\|... - gi\|75907833\|ref\|YP_322129.1\| amino acid adenylation [Anabaena variabilis ATCC 29413], gi\|75701558\|gb...	471.0	[0..84]	[817..471]
gi\|23129356 - gi\|23129356\|ref\|ZP_00111185.1\| COG1020: Non-ribosomal peptide synthetase modules and related protein...	455.0	[0..131]	[817..2646]
gi\|9715733 - gi\|9715733\|emb\|CAC01603.1\| peptide synthetase [Anabaena circinalis 90]	453.0	[0..99]	[816..527]
TYCC_BREPA - Tyrocidine synthase 3 OS=Brevibacillus parabrevis GN=tycC PE=1 SV=1 gi\|2623773, gi\|7... - gi\|7522159\|pir\|\|T31076 tyrocidine synthetase 3 - Brevibacillus brevis, gi\|2623773\|gb\|AAC45930.1\| tyr...	442.0	[0..179]	[817..1521]
gi\|67855376, gi\|... - gi\|67922760\|ref\|ZP_00516261.1\| Amino acid adenylation [Crocosphaera watsonii WH 8501], gi\|67855376\|g...	440.0	[0..110]	[817..424]
gi\|27817222 - gi\|27817222\|gb\|AAO23333.1\| NcpA [Nostoc sp. ATCC 53789]	438.0	[0..34]	[817..403]
gi\|6563400 - gi\|6563400\|gb\|AAF17281.1\| NosD [Nostoc sp. GSV224]	435.0	[0..99]	[817..413]
gi\|6649938 - gi\|6649938\|gb\|AAF21639.1\| long-chain acyl-CoA synthetase; fatty acid activation enzyme; ACOAS-1 [Pla... gi\|6649938 - gi\|6649938\|gb\|AAF21639.1\|AF031627_1 long-chain acyl-CoA synthetase; fatty acid activation enzyme; AC...	435.0	[0..1]	[820..1]

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Predicted Domain #1

Region A:
Residues: [1-708]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIILNIYIF FIYLIYVRSH FSQPTSSEYE GYSEICEKAR NANESSVYCM KDYKRNSSKY  60
   61 MYKHIMRMFI EKHNLNDNKI ALIEHECGEP QNYMTYDTFL RKILSFNNSL NKYDGINIPE 120
  121 KIYNEEMNNG KFKLLGLYGS NSINWLVADL GAMLSGVTTL VMHSKFSMDV IVGILNETKL 180
  181 EWLCLDLDLV EGLMERINEL PHLKNLIILD TVAKQGIINS TIEKNKNINL KGNGNLNNMN 240
  241 NKKGNDLSKN LEDVRLGPIK YDKEKLEKFK SLKERYHKYL EKFLLLDDVI NNENTNFKIK 300
  301 NEDPNFVTSI VYTSGSSGMP KGAMLSNKNL YNQLYSLYNH SVRKTYNLQY HLSYLPISHV 360
  361 FERTIAYSII FLRGTVHIWS KNLNYFSKDI LNSNSVIMTG VPKVFSRIYT NIMTEINNLS 420
  421 PFKRCIIKKI ISLKKSNKKR WLVNFLENLF HISSKIKEKV NPNLEIILNG GGKLSPDVAS 480
  481 ELCNLLNIKY CQGYGLTETG GAIFGKHVED LNFECIGGPI CPNTKYKVRS WETYKATDTL 540
  541 PKGELLIKSD SIFRGYFLEK EYTKNAFTND GYFKTGDVVQ INKNGTLTFL DRSKGLVKLS 600
  601 QGEYIETDLL NNLYSQISFI NNCVVYGDDS MDGPLAIISV DKYLLFLSLK DDNMLEMTGV 660
  661 NEQNYLDKLT DDNINNNIFL DYVKEKMLEV YKETNLNRYN IINNIYLT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	101.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

Predicted Domain #2

Region A:
Residues: [709-820]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKVWDTNNYL TPTFKVKRFY VFKDYAFFIS QVKEIYNNKL KGCAPISVNS ENKDEEKKND  60
   61 SKKKEEKDSE KLSNESTSNQ NKNDMGKHEK YVENKKVKLG ATYGTRQKEM NK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits