YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254234409, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254234409, gi....

Description	E-value	Query Range	Subject Range
gi\|49081710 - gi\|49081710\|gb\|AAT50255.1\| PA1287 [synthetic construct]	5.0E-40	[1..184]	[1..184]
gi\|107100738 - gi\|107100738\|ref\|ZP_01364656.1\| hypothetical protein PaerPA_01001766 [Pseudomonas aeruginosa PACS2] gi\|84321971 - gi\|84321971\|ref\|ZP_00970321.1\| COG0386: Glutathione peroxidase [Pseudomonas aeruginosa C3719]	2.0E-37	[5..184]	[1..180]
gi\|56420320, gi\|... - gi\|56420320\|ref\|YP_147638.1\| glutathione peroxidase [Geobacillus kaustophilus HTA426], gi\|56380162\|d...	4.0E-36	[26..180]	[2..158]
gi\|67931957, gi\|... - gi\|67931957\|ref\|ZP_00525110.1\| Glutathione peroxidase [Solibacter usitatus Ellin6076], gi\|67860827\|g...	6.0E-36	[11..182]	[5..180]
gi\|18309893, gi\|... - gi\|18309893\|ref\|NP_561827.1\| glutathione peroxidase [Clostridium perfringens str. 13], gi\|18144571\|d... gi\|169346931, gi... - gi\|169346931\|ref\|ZP_02865879.1\| glutathione peroxidase [Clostridium perfringens C str. JGS1495], gi\|... gi\|177909775, gi... - gi\|182624978\|ref\|ZP_02952756.1\| glutathione peroxidase [Clostridium perfringens D str. JGS1721], gi\|... gi\|170663489, gi... - gi\|170663489\|gb\|EDT16172.1\| glutathione peroxidase [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|170716055, gi... - gi\|170716055\|gb\|EDT28237.1\| glutathione peroxidase [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|168216219, gi... - gi\|182381756\|gb\|EDT79235.1\| glutathione peroxidase [Clostridium perfringens NCTC 8239], gi\|168216219...	3.0E-35	[26..181]	[2..158]
gi\|48374968, gi\|... - gi\|48374968\|gb\|AAT42166.1\| putative glutathione peroxidase [Sorghum bicolor], gi\|242073970\|ref\|XP_00...	5.0E-35	[19..182]	[2..167]
GPX7_ARATH - Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=3 SV=2	6.0E-35	[15..182]	[64..233]
gi\|162458182, gi... - gi\|22268405\|gb\|AAM88847.2\|AF520911_1 putative glutathione peroxidase [Zea mays], gi\|162458182\|ref\|NP...	6.0E-35	[19..182]	[2..167]
GPO_LACLA - Glutathione peroxidase OS=Lactococcus lactis subsp. lactis GN=gpo PE=3 SV=2 GPO_LACLA - Glutathione peroxidase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=gpo PE=3 SV=2	7.0E-35	[27..180]	[3..157]
gi\|110674820, gi... - gi\|110800173\|ref\|YP_695353.1\| glutathione peroxidase [Clostridium perfringens ATCC 13124], gi\|110674...	9.0E-35	[26..180]	[2..157]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRVLLSVL ALAGLPLSGW AADCPELLQG QLTKLRSKES IDLCQRYAGK PLVVVNTASH  60
   61 CGFTPQFKGL EALYQRYKGQ GLEVLGVPSD DFKQEAADTA ETAKICYGNY GVTFAMTQPQ 120
  121 HVRGDEAIPL FRQLAEQSGQ APRWNFYKYV VDRQGRVVAQ FSSKTTPDDP QLQAAIEKAI 180
  181 ASQP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2p5qA
Description:	No description for 2p5qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits