YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126511758, gi...
Organism:	Vibrio cholerae NCTC 8457
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126511758, gi....

Description	E-value	Query Range	Subject Range
gi\|124116261, gi... - gi\|153212883\|ref\|ZP_01948500.1\| ribose ABC transporter protein [Vibrio cholerae 1587], gi\|124116261\|... gi\|75820336, gi\|... - gi\|75820336\|ref\|ZP_00750386.1\| COG1869: ABC-type ribose transport system, auxiliary component [Vibri... gi\|150425635, gi... - gi\|254284850\|ref\|ZP_04959817.1\| ribose ABC transporter protein [Vibrio cholerae AM-19226], gi\|197754... gi\|148874102, gi... - gi\|153830428\|ref\|ZP_01983095.1\| ribose ABC transporter protein [Vibrio cholerae 623-39], gi\|14887410...	229.0	[0..1]	[156..1]
gi\|75815455 - gi\|75815455\|ref\|ZP_00745963.1\| COG1869: ABC-type ribose transport system, auxiliary component [Vibri... tr\|A0A023PSD9\|A0... - D-ribose pyranase OS=Vibrio cholerae GN=rbsD PE=3 SV=1 gi\|75824939 - gi\|75824939\|ref\|ZP_00754375.1\| COG1869: ABC-type ribose transport system, auxiliary component [Vibri... gi\|75830916, gi\|... - gi\|75830916\|ref\|ZP_00760186.1\| COG1869: ABC-type ribose transport system, auxiliary component [Vibri...	227.0	[0..4]	[156..1]
gi\|75824691, gi\|... - gi\|75824691\|ref\|ZP_00754138.1\| COG1869: ABC-type ribose transport system, auxiliary component [Vibri... tr\|A0A023PRI5\|A0... - D-ribose pyranase OS=Vibrio cholerae GN=rbsD PE=3 SV=1	224.0	[0..4]	[156..1]
gi\|77973817, gi\|... - gi\|77973817\|ref\|ZP_00829362.1\| COG1869: ABC-type ribose transport system, auxiliary component [Yersi...	197.0	[0..18]	[156..1]
gi\|77977919, gi\|... - gi\|77977919\|ref\|ZP_00833356.1\| COG1869: ABC-type ribose transport system, auxiliary component [Yersi...	196.0	[0..18]	[156..1]
gi\|238783006, gi... - gi\|77958203\|ref\|ZP_00822241.1\| COG1869: ABC-type ribose transport system, auxiliary component [Yersi... gi\|238718305, gi... - gi\|77961833\|ref\|ZP_00825663.1\| COG1869: ABC-type ribose transport system, auxiliary component [Yersi...	196.0	[0..18]	[156..1]
gi\|74314269, gi\|... - gi\|74314269\|ref\|YP_312688.1\| D-ribose pyranase [Shigella sonnei Ss046], gi\|73857746\|gb\|AAZ90453.1\| D... gi\|194425465, gi... - gi\|83588387\|ref\|ZP_00927011.1\| COG1869: ABC-type ribose transport system, auxiliary component [Esche...	196.0	[0..18]	[156..13]
RBSD_ECOHS - D-ribose pyranase OS=Escherichia coli O9:H4 (strain HS) GN=rbsD PE=3 SV=1 RBSD_ECOSM - D-ribose pyranase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rbsD PE=3 SV=2 RBSD_ECOLU - D-ribose pyranase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rbsD PE=3 SV=1 RBSD_ECOLC - D-ribose pyranase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rbsD PE=3 SV=1 RBSD_ECO55 - D-ribose pyranase OS=Escherichia coli (strain 55989 / EAEC) GN=rbsD PE=3 SV=1 RBSD_ECO7I - D-ribose pyranase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rbsD PE=3 SV=1 RBSD_SHIBS - D-ribose pyranase OS=Shigella boydii serotype 4 (strain Sb227) GN=rbsD PE=3 SV=1 gi\|193063874, gi... - gi\|193063874\|ref\|ZP_03044961.1\| cytoplasmic D-ribose-binding protein RbsD [Escherichia coli E22], gi... gi\|56383975, gi\|... - gi\|56480424\|ref\|NP_709562.2\| D-ribose pyranase [Shigella flexneri 2a str. 301], gi\|56383975\|gb\|AAN45... RBSD_ESCF3 - D-ribose pyranase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rbsD PE... RBSD_SHIB3 - D-ribose pyranase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rbsD PE=3 SV=1 gi\|188491603, gi... - gi\|188496404\|ref\|ZP_03003674.1\| cytoplasmic D-ribose-binding protein RbsD [Escherichia coli 53638], ... gi\|253975602, gi... - gi\|254163701\|ref\|YP_003046809.1\| predicted cytoplasmic sugar-binding protein [Escherichia coli B str... gi\|30043207, gi\|... - gi\|30064946\|ref\|NP_839117.1\| D-ribose pyranase [Shigella flexneri 2a str. 2457T], gi\|30043207\|gb\|AAP... gi\|124499443, gi... - gi\|124530038\|ref\|ZP_01700821.1\| RbsD or FucU transport [Escherichia coli B], gi\|124499443\|gb\|EAY4693... RBSD_SHISS - D-ribose pyranase OS=Shigella sonnei (strain Ss046) GN=rbsD PE=3 SV=2 RBSD_SHIFL - D-ribose pyranase OS=Shigella flexneri GN=rbsD PE=3 SV=4 RBSD_SHIF8 - D-ribose pyranase OS=Shigella flexneri serotype 5b (strain 8401) GN=rbsD PE=3 SV=1	195.0	[0..18]	[156..1]
gi\|24054314, gi\|... - ref\|NP_709562.1\| D-ribose high-affinity transport system; membrane-associated protein [Shigella flex... gi\|170520910, gi... - gi\|170683192\|ref\|YP_001746078.1\| cytoplasmic D-ribose-binding protein RbsD [Escherichia coli SMS-3-5... gi\|75511067 - gi\|75511067\|ref\|ZP_00733802.1\| COG1869: ABC-type ribose transport system, auxiliary component [Esche... gi\|75258287 - gi\|75258287\|ref\|ZP_00729735.1\| COG1869: ABC-type ribose transport system, auxiliary component [Esche... gi\|75210642, gi\|... - gi\|75210642\|ref\|ZP_00710783.1\| COG1869: ABC-type ribose transport system, auxiliary component [Esche... gi\|75197644 - gi\|75197644\|ref\|ZP_00707714.1\| COG1869: ABC-type ribose transport system, auxiliary component [Esche... gi\|75177681 - gi\|75177681\|ref\|ZP_00697746.1\| COG1869: ABC-type ribose transport system, auxiliary component [Shige...	194.0	[0..18]	[156..5]
gi\|26110924, gi\|... - gi\|26250494\|ref\|NP_756534.1\| D-ribose pyranase [Escherichia coli CFT073], gi\|26110924\|gb\|AAN83108.1\|... gi\|227839248, gi... - gi\|227883970\|ref\|ZP_04001775.1\| D-ribose pyranase [Escherichia coli 83972], gi\|227839248\|gb\|EEJ49714...	194.0	[0..18]	[156..5]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVMLSLFKR ESIKGITMKK STLLNSELSY LVATLGHTDE ITICDAGLPI PDEVTRIDLA  60
   61 LTHGVPSFLE TVRVILSESQ IESVIVAQEF AQVSPVLHEA LYRELKAEEQ LCGKPIAIQY 120
  121 ISHEAFKQRT LQSRAVVRTG ECTPYANVIF QAGVVF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1ogcA
Description:	The Structure of Bacillus subtilis RbsD complexed with D-ribose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits