YRC Public Data Repository - Protein Structure Prediction

Protein:	AT5G2_RAT
Organism:	Rattus norvegicus
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AT5G2_RAT.

Description	E-value	Query Range	Subject Range
gi\|114581903 - gi\|114581903\|ref\|XP_525965.2\| PREDICTED: similar to mitochondrial ATP synthase subunit 9 precursor [...	177.0	[0..1]	[141..140]
gi\|74003411 - gi\|74003411\|ref\|XP_545225.2\| PREDICTED: similar to 5-hydroxytryptamine receptor 3 subunit C [Canis f...	159.0	[0..1]	[127..1]
gi\|50750427 - gi\|50750427\|ref\|XP_426577.1\| PREDICTED: similar to Cg1746-prov protein [Gallus gallus]	154.0	[0..2]	[141..191]
gi\|109096967 - gi\|109096967\|ref\|XP_001107007.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	153.0	[0..1]	[141..58]
gi\|85794840, gi\|... - gi\|85794840\|ref\|NP_005167.2\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 iso... gi\|114644458 - gi\|114644458\|ref\|XP_509102.2\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex, su...	150.0	[0..1]	[141..58]
AT5G3_BOVIN - ATP synthase F(0) complex subunit C3, mitochondrial OS=Bos taurus GN=ATP5G3 PE=2 SV=1	143.0	[0..1]	[141..1]
AT5G2_PONAB - ATP synthase F(0) complex subunit C2, mitochondrial OS=Pongo abelii GN=ATP5G2 PE=2 SV=1 AT5G2_PONPY - ATP synthase lipid-binding protein, mitochondrial precursor - Pongo pygmaeus (Orangutan)	142.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYACSKFVST RSLIRSTSQL LSRPLSAVEL KRPQMPTDEG LSCLAVRRPL TSLIPSRSFQ  60
   61 TSAISRDIDT AAKFIGAGAA TVGVAGSGAG IGTVFGSLII GYARNPSLKQ QLFSYAILGF 120
  121 ALSEAMGLFC LMVAFLILFA M

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.39794
Match:	1yceA
Description:	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits