YRC Public Data Repository - Protein Structure Prediction

Protein:	AT5G1_RAT
Organism:	Rattus norvegicus
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AT5G1_RAT.

Description	E-value	Query Range	Subject Range
gi\|114581903 - gi\|114581903\|ref\|XP_525965.2\| PREDICTED: similar to mitochondrial ATP synthase subunit 9 precursor [...	176.0	[0..1]	[136..140]
gi\|73966259, gi\|... - gi\|73966259\|ref\|XP_548181.2\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial F0 c...	155.0	[0..1]	[136..1]
AT5G1_MOUSE, AT9... - (P48202) ATP synthase lipid-binding protein, mitochondrial precursor (EC 3.6.3.14) (ATP synthase pro...	150.0	[0..1]	[136..1]
AT5G1_SHEEP - ATP synthase F(0) complex subunit C1, mitochondrial OS=Ovis aries GN=ATP5G1 PE=1 SV=2	149.0	[0..1]	[136..1]
AT5G1_BOVIN - ATP synthase F(0) complex subunit C1, mitochondrial OS=Bos taurus GN=ATP5G1 PE=1 SV=1	149.0	[0..1]	[136..1]
gi\|55646787, gi\|... - gi\|55646787\|ref\|XP_511941.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex, sub... ATP5G1 - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) gi\|60823066, gi\|... - gi\|60823066\|gb\|AAX36631.1\| ATP synthase mitochondrial F0 complex subunit c isoform 1 [synthetic cons...	148.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTTKALLIS PVLIRSCTRG LIRPVSASLL SRPEAPSKKP SCCSSPLQVA RREFQTSVIS  60
   61 RDIDTAAKFI GAGAATVGVA GSGAGIGTVF GSLIIGYARN PSLKQQLFSY AILGFALSEA 120
  121 MGLFCLMVAF LILFAM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.154902
Match:	1yceA
Description:	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits