YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121548512, gi...
Organism:	Vibrio cholerae 2740-80
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121548512, gi....

Description	E-value	Query Range	Subject Range
gi\|28808075, gi\|... - gi\|28899823\|ref\|NP_799428.1\| SpoOM-related protein [Vibrio parahaemolyticus RIMD 2210633], gi\|288080... gi\|28808075 - gi\|28808075\|dbj\|BAC61312.1\| SpoOM-related protein [Vibrio parahaemolyticus RIMD 2210633]	396.0	[0..18]	[279..3]
gi\|229346171, gi... - gi\|229517108\|ref\|ZP_04406554.1\| hypothetical protein VCC_001129 [Vibrio cholerae RC9], gi\|229346171\|... gi\|229354112, gi... - gi\|229508837\|ref\|ZP_04398328.1\| hypothetical protein VCE_000242 [Vibrio cholerae B33], gi\|229354112\|... gi\|229508324, gi... - gi\|229508324\|ref\|ZP_04397828.1\| hypothetical protein VCF_003559 [Vibrio cholerae BX 330286], gi\|2293... gi\|229606599, gi... - gi\|229606599\|ref\|YP_002877247.1\| hypothetical protein VCD_001508 [Vibrio cholerae MJ-1236], gi\|22936... gi\|75829918, gi\|... - gi\|75829918\|ref\|ZP_00759207.1\| COG4326: Sporulation control protein [Vibrio cholerae MO10], gi\|11618... gi\|75816177 - gi\|75816177\|ref\|ZP_00746655.1\| COG4326: Sporulation control protein [Vibrio cholerae V52] gi\|75828111 - gi\|75828111\|ref\|ZP_00757546.1\| COG4326: Sporulation control protein [Vibrio cholerae O395]	395.0	[0..18]	[280..1]
gi\|91226295, gi\|... - gi\|91226295\|ref\|ZP_01261135.1\| SpoOM-related protein [Vibrio alginolyticus 12G01], gi\|91189306\|gb\|EA...	388.0	[0..18]	[279..1]
gi\|116185050, gi... - gi\|75855525\|ref\|ZP_00763173.1\| COG4326: Sporulation control protein [Vibrio sp. Ex25], gi\|254229992\|...	386.0	[0..18]	[279..1]
gi\|37200167, gi\|... - gi\|37681415\|ref\|NP_936024.1\| SpoOM-related protein [Vibrio vulnificus YJ016], gi\|37200167\|dbj\|BAC959...	380.0	[0..18]	[279..3]
gi\|27360593, gi\|... - gi\|27364474\|ref\|NP_760002.1\| SpoOM-related protein [Vibrio vulnificus CMCP6], gi\|27360593\|gb\|AAO0952...	380.0	[0..18]	[279..1]
gi\|54310623, gi\|... - gi\|54310623\|ref\|YP_131643.1\| putative SpoOM-related protein [Photobacterium profundum SS9], gi\|46915...	379.0	[0..18]	[279..1]
gi\|90413773, gi\|... - gi\|90413773\|ref\|ZP_01221761.1\| Putative SpoOM-related protein [Photobacterium profundum 3TCK], gi\|90...	371.0	[0..18]	[279..1]
gi\|17231645, gi\|... - gi\|17231645\|ref\|NP_488193.1\| hypothetical protein alr4153 [Nostoc sp. PCC 7120], gi\|17133288\|dbj\|BAB... gi\|25367938 - pir\|\|AB2325 hypothetical protein alr4153 [imported] - Nostoc sp. (strain PCC 7120)	346.0	[0..17]	[279..18]
gi\|86147136, gi\|... - gi\|86147136\|ref\|ZP_01065452.1\| spoOM-related protein [Vibrio sp. MED222], gi\|85835020\|gb\|EAQ53162.1\|...	346.0	[0..18]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQGLALTMQ FSQQEVSMSF IKKTLASFGI GSAKVDSVLQ QEVLYPGQSV KVIIHVYGGA  60
   61 TAQVIDNIEL KLCCCYIAEV ADERGQQQGQ PMRRVPHTYT LANWSLPYAF TIEAGETRNF 120
  121 DIELSIPWNT PVTIGDAKVW LETGLDIALA LDPTDKDILT VRPEPMMDGI FSALEAQGLR 180
  181 LRQVECEQAK GFALPFVQEF EFVPTTGPFQ GRWREVEIVA YRDPEALQLW FEVDRYQRGA 240
  241 SGMLASLLGR GELKRHLTLP ARTSPQEAGE QVLAFLDRSC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.02
Match:	2fauA
Description:	No description for 2fauA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits