YRC Public Data Repository - Protein Structure Prediction

Protein:	RNAS4_RAT
Organism:	Rattus norvegicus
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNAS4_RAT.

Description	E-value	Query Range	Subject Range
gi\|26344600, gi\|... - gi\|31981520\|ref\|NP_035401.2\| pancreatic ribonuclease [Mus musculus], gi\|26344600\|dbj\|BAC35949.1\| unn...	229.0	[0..1]	[146..1]
RNAS1_MUSSA - Ribonuclease pancreatic OS=Mus saxicola GN=Rnase1 PE=2 SV=1	229.0	[0..1]	[146..1]
gi\|18376502 - gi\|18376502\|emb\|CAC86435.1\| pancreatic ribonuclease alpha [Berylmys bowersi]	228.0	[0..1]	[146..1]
RNS1A_RATEX - Ribonuclease pancreatic alpha-type OS=Rattus exulans PE=3 SV=1	226.0	[0..1]	[146..1]
RNAS1_MUSPA - Ribonuclease pancreatic OS=Mus pahari GN=Rnase1 PE=2 SV=1	221.0	[0..1]	[146..1]
RNAS1_URARU - Ribonuclease pancreatic OS=Uranomys ruddi GN=RNASE1 PE=2 SV=1	221.0	[0..1]	[146..1]
RNAS1_NIVCR - Ribonuclease pancreatic OS=Niviventer cremoriventer GN=RNASE1 PE=2 SV=1	221.0	[0..1]	[146..1]
RNS1A_RATFU - Ribonuclease pancreatic alpha-type OS=Rattus fuscipes PE=3 SV=1	220.0	[0..1]	[146..1]
RNAS1_LEOED, RNP... - (Q9WUS3) Ribonuclease pancreatic precursor (EC 3.1.27.5) (RNase 1) (RNase A), (Q9WUS3) Ribonuclease ... RNAS1_LEOED - Ribonuclease pancreatic OS=Leopoldamys edwardsi GN=RNASE1 PE=2 SV=1	219.0	[0..1]	[146..1]
RNAS1_ABRJE - Ribonuclease pancreatic OS=Abrothrix jelskii GN=RNASE1 PE=2 SV=1	218.0	[0..1]	[146..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIQRTQSLL LLLLLTLLGL GLVQPSYGQD RMYQRFLRQH VDPEGTGGSD NYCNVMMQRR  60
   61 RMTSTQCKRF NTFIHEDIWN IRSICDTANI PCKNGNMNCH EGIVRVTDCR ETGSSVPHNC 120
  121 RYRARASTRR VVIACEGTPE VPVHFDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.09691
Match:	1rnfA
Description:	Ribonuclease 4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits