YRC Public Data Repository - Protein Structure Prediction

Protein:	IL13_RAT
Organism:	Rattus norvegicus
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IL13_RAT.

Description	E-value	Query Range	Subject Range
gi\|33088189 - gi\|33088189\|gb\|AAP93198.1\| interleukin 13 [Sigmodon hispidus]	230.0	[0..1]	[130..1]
gi\|110559067 - gi\|110559067\|gb\|ABG75889.1\| IL13 [Macaca fascicularis]	230.0	[0..1]	[131..1]
IL13_MACMU - Interleukin-13 OS=Macaca mulatta GN=IL13 PE=2 SV=1	229.0	[0..1]	[131..1]
IL13_MOUSE - Interleukin-13 OS=Mus musculus GN=Il13 PE=2 SV=1 gi\|157170028 - gi\|157170028\|gb\|AAI52855.1\| Interleukin 13 [synthetic construct]	225.0	[0..1]	[130..1]
IL13_PIG - Interleukin-13 OS=Sus scrofa GN=IL13 PE=2 SV=1	219.0	[0..1]	[130..1]
gi\|21617529 - gi\|21617529\|gb\|AAM66721.1\|AF518409_1 interleukin 13 [Meriones unguiculatus]	217.0	[0..1]	[125..1]
gi\|116138167 - gi\|116138167\|gb\|AAH96141.2\| Interleukin 13 [Homo sapiens]	215.0	[0..1]	[131..1]
gi\|67944395 - gi\|67944395\|gb\|AAY83833.1\| interleukin-13 [Bubalus bubalis]	215.0	[0..1]	[129..1]
IL13_CAMBA - Interleukin-13 OS=Camelus bactrianus GN=IL13 PE=2 SV=1 IL13_LAMGL - Interleukin-13 OS=Lama glama GN=IL13 PE=2 SV=1	215.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALWVTAVLA LACLGGLATP GPVRRSTSPP VALRELIEEL SNITQDQKTS LCNSSMVWSV  60
   61 DLTAGGFCAA LESLTNISSC NAIHRTQRIL NGLCNQKASD VASSPPDTKI EVAQFISKLL 120
  121 NYSKQLFRYG H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.045757
Match:	1ga3A
Description:	Interleukin-13 (IL-13)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits