YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125556387
Organism:	Oryza sativa Indica Group
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125556387.

Description	E-value	Query Range	Subject Range
ALIS3_ARATH - ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1	491.0	[0..29]	[358..22]
gi\|115444527, gi... - gi\|50905645\|ref\|XP_464311.1\| LEM3 (ligand-effect modulator 3)-like [Oryza sativa (japonica cultivar-...	480.0	[0..29]	[358..23]
gi\|83770983 - gi\|83770983\|dbj\|BAE61116.1\| unnamed protein product [Aspergillus oryzae] gi\|238490103, gi... - gi\|238490103\|ref\|XP_002376289.1\| LEM3/CDC50 family protein [Aspergillus flavus NRRL3357], gi\|2206986... gi\|169764110 - gi\|169764110\|ref\|XP_001727955.1\| hypothetical protein [Aspergillus oryzae RIB40]	469.0	[0..1]	[354..1]
gi\|92872155 - gi\|92872155\|gb\|ABE80922.1\| Protein of unknown function DUF284, transmembrane eukaryotic [Medicago tr...	469.0	[0..15]	[356..3]
gi\|119196363, gi... - gi\|90307571\|gb\|EAS37202.1\| hypothetical protein CIMG_02556 [Coccidioides immitis RS], gi\|119196363\|r... gi\|240110908 - gi\|240110908\|gb\|EER29064.1\| LEM3 family / CDC50 family protein [Coccidioides posadasii C735 delta SO...	468.0	[0..8]	[356..3]
gi\|49256669, gi\|... - gi\|49256669\|gb\|AAH74040.1\| Transmembrane protein 30A [Danio rerio], gi\|182890382\|gb\|AAI64201.1\| Tmem...	465.0	[0..2]	[342..4]

Back

Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNHAAGGST SNGGSGVDGD GGGGGGAARR NTKMPKYSKF TQQELPACKP ILTPKWVVSV  60
   61 FFLVGVIFVP VGVVSLLAAQ NVVEIVDRYD DACVPANMTD NKLAYIQNPN ISKECTRTLT 120
  121 ITEDMNQPIF VYYQLDNFYQ NHRRYVKSRN DGQLRDA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKANQTSACE PEKTTADGKP IVPCGLIAWS LFNDTYSFTR GNENLTVDKK DISWKSDRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [217-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKFGKNVYPS NFQNGLLKGG GTLDPAIPLS EQEDLIVWMR TAALPTFRKL YGRIYVDLKK  60
   61 NDTITVKLSN NYNTYNFGGK KKLVLSTATW LGGKNDFLGF AYVIVGGVCF FLAFAFTLLY 120
  121 LIKPRKLGDH NYLSWNRHPG GR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits